Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C02
         (298 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   106   7e-26
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   1.8  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   2.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   2.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   3.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   7.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   9.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                19   9.8  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  106 bits (254), Expect = 7e-26
 Identities = 54/65 (83%), Positives = 57/65 (87%)
 Frame = +1

Query: 103 ENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSCIGIVAMPVMLFEQIMKSIIPVVMAGII 282
           ++PIY PFFGVMGAASAIIFS+LGAAYGTAKS  GI AM VM  E IMKSIIPVVMAGII
Sbjct: 5   DHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64

Query: 283 AIYGL 297
           AIYGL
Sbjct: 65  AIYGL 69


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 76  FTGPKNSDDYLPRAEFMQPGDPLVL 2
           F GPK  D  +     MQP  P+ L
Sbjct: 421 FVGPKVKDCLISWNPLMQPKQPIKL 445


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +3

Query: 114 LWTFLWSYGGGVCHH-LQLP 170
           LW    ++ GG CH  +Q+P
Sbjct: 2   LWRMTGTWVGGFCHSIIQIP 21


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 195 LGCAICSTKGAEDDGRRRPHNS 130
           L C + +T+GA+D   R P ++
Sbjct: 308 LHCNMENTEGADDASERNPRSA 329


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 3.2
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +3

Query: 201 HR-YCRHAGDAF*ADH-EIHHSRCHGG 275
           HR  C   G  + A+H E+H + CH G
Sbjct: 114 HRPVCASNGKIY-ANHCELHRAACHSG 139


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 50  LSASCRIHAARGSTSS 3
           L ++CRIH +  +T++
Sbjct: 438 LGSACRIHGSPATTAA 453


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +3

Query: 252 HHSRCHGGYHCH 287
           HH+  HG  H H
Sbjct: 416 HHTMGHGHSHIH 427


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -2

Query: 228 HHRHGDNT 205
           HH+HG++T
Sbjct: 335 HHQHGNHT 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,079
Number of Sequences: 438
Number of extensions: 2685
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)