Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C01
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    32   0.017
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   1.9  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   1.9  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   2.6  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    24   4.5  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    24   4.5  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    24   5.9  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    24   5.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    24   5.9  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    23   7.9  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    23   7.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   7.9  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    23   7.9  
SPBC216.06c |swi1||replication fork protection complex subunit S...    23   7.9  

>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 32.3 bits (70), Expect = 0.017
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 142 TTDVAGVRDEKNFPRPVRLTEPGKVRLGFIPEEWFQFFHS 261
           TTD+A V D+KN P P  +    K  L    E +F F  S
Sbjct: 760 TTDIAAVVDDKNIPSPSGVIPAYKSALNVAAETYFSFLAS 799


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 142 WSFWQ*VLCTGTVWPQLN 89
           WS W  +   GT WP ++
Sbjct: 573 WSLWNFITMLGTAWPAIS 590


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 89  RKATRDSIFMRKFTTVNLVKYVDRRTK 9
           RK T  S+ + KF+T  L+K +  R+K
Sbjct: 398 RKITHPSLHLGKFSTPKLIKRMSLRSK 424


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 231 NESESHFTRFSEPDWSWEVLLITHTSN 151
           N  E     F E DWSWE   + H+S+
Sbjct: 219 NNVEKANMEFDETDWSWETPFL-HSSS 244


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 63  KNAITRSFTFSCGQTVPVHSTYCQKLHHR 149
           KN +T      CG  +P+ S + +   HR
Sbjct: 123 KNNLTTVLELGCGSAIPILSCFQEFYKHR 151


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 178 FPRPVRL---TEPGKVRLGFIPEEWFQFFH 258
           F RPV +    + G  RLGF P ++ +F++
Sbjct: 122 FNRPVEIWLKLDSGMNRLGFTPSQFMKFYN 151


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 215 TLPGSVSLTGLGKFFSSRTPATSVVELLAISAVYGDCLAAAERKATRDSI 66
           T+  S+S++      S  TPA  +V   +ISA   D     E  +T + +
Sbjct: 177 TILSSLSISTSNNAMSKTTPAPPLVTTKSISADQDDFYTCKEEVSTYEGL 226


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 170 RRTSQDQSGSLNLVK*DSDSFLKNGSSSSTQRL 268
           +RTS     S + V  DS + L NG SSS   L
Sbjct: 228 KRTSTSADISQHTVSNDSSNKLSNGRSSSLDSL 260


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 206  GSVSLTGLGKFFSSRTPATSVVELLAISAVY 114
            GS   T L  F+S+ + A+SVV+ L I + +
Sbjct: 3931 GSAVTTSLSTFYSASSLASSVVKPLYILSTF 3961


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 237 FRNESESHFTRFSEPDWSWEVLLITHTSNI 148
           F +E+  +FT  ++ + S E LL TH++ +
Sbjct: 618 FTDETNGYFTLLNDFNASMEELLNTHSNQL 647


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 224 PSLTLPGSVSLTGLGKFFSSRTPATS 147
           P+L LPG + +T + ++F S  P  S
Sbjct: 223 PNLVLPGPLLVTSMLEYFRSVYPQMS 248


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 128 ISAVYGDCLAAAERKATRDSIFMRKFTTV 42
           +S VYGD  A AE    +DS   +K  TV
Sbjct: 487 MSTVYGDRSARAEDHKPKDSSAGQKMGTV 515


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 245 NHSSGMNPSLTLPGSVSLTGLGKFFSSRT 159
           N+SSG   S T+  +      GKFFS  +
Sbjct: 384 NNSSGNTDSSTIGYAAVFAAAGKFFSQHS 412


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 9   FRPTVDIFYEIYSGEFTHKNAI 74
           FR  VD+ Y +   +  +KN+I
Sbjct: 110 FRENVDVLYNLRQAQSNYKNSI 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,371,159
Number of Sequences: 5004
Number of extensions: 25819
Number of successful extensions: 79
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)