Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_C01
(310 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0599 + 25395606-25395705,25396465-25396544,25396901-253969... 35 0.015
07_01_1113 - 10292781-10293299 30 0.43
01_05_0273 - 20283965-20284085,20284197-20284348,20284828-202850... 28 1.3
02_01_0016 + 110796-110979,111252-111768,111847-112213 27 4.0
03_02_0163 - 6056959-6058989 26 5.2
09_01_0138 - 2070357-2070722 25 9.2
06_03_0604 - 22682421-22682561 25 9.2
02_01_0079 + 554635-556098 25 9.2
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 25 9.2
>11_06_0599 +
25395606-25395705,25396465-25396544,25396901-25396966,
25397076-25397123,25397226-25397293,25397404-25397476,
25397573-25397734,25398042-25398236,25398325-25398413,
25398487-25398676
Length = 356
Score = 34.7 bits (76), Expect = 0.015
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -2
Query: 258 VEELEPFFRNESESHFTRFSEPDWSWEVLL---ITHTSNICGGASGNKCCVRGLFGRS 94
V L P+F E + FS W E ++ +T IC G+ + C R ++GRS
Sbjct: 243 VPHLPPYFCYLGEWTYHHFSREVWLHETIVGNVVTRNETICDGSGEDPTCSRSVYGRS 300
>07_01_1113 - 10292781-10293299
Length = 172
Score = 29.9 bits (64), Expect = 0.43
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 175 NFPRPVRLTE-PGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLT 306
N PR R T PG +RL + + + H + GP+ G+GL+
Sbjct: 100 NPPRSARTTSAPGSLRLPEVAQRVVELLHHRHWWFGPWALGLGLS 144
>01_05_0273 -
20283965-20284085,20284197-20284348,20284828-20285001,
20285082-20285331,20285782-20285898,20286412-20286474,
20286568-20286740
Length = 349
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -3
Query: 212 LPGSVSLTGLGKFFSSRTPATSVVELLAISAVY 114
+ GSV++ GLG +SS T ++++ LL + A +
Sbjct: 80 IAGSVNIYGLGLSYSSATSSSAISNLLPVLAFF 112
>02_01_0016 + 110796-110979,111252-111768,111847-112213
Length = 355
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 79 VALRSAAAKQSPYTALIARSSTTDVAGV 162
V L++AA +P T +RSS+T VAG+
Sbjct: 15 VVLKAAAGSAAPPTTTRSRSSSTVVAGM 42
>03_02_0163 - 6056959-6058989
Length = 676
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -2
Query: 258 VEELEPFFRNESESHFTRFSEPDWSWE--VLLITHTSNICG 142
VEE E FR+ S +R WS+ V L + T N+ G
Sbjct: 375 VEEAEEIFRDMKASMDSRSKPDSWSYSSMVTLYSCTGNVAG 415
>09_01_0138 - 2070357-2070722
Length = 121
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Frame = -3
Query: 209 PGSVSLTGLGKF--------FSSRTPATSVVELLAISAVYGDCLAAAERKATRD 72
PG+++L GLG F + P T E+ ++ +GD +A + T D
Sbjct: 55 PGTMALAGLGIFGVLGYLVLYHKARPGTPATEVAKVAVGHGDPVAGRDAHKTPD 108
>06_03_0604 - 22682421-22682561
Length = 46
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 157 GVRDEKNFPRPVRLTEPGKVR 219
G +EK PR R EPGK R
Sbjct: 18 GPGEEKQLPRRPRAPEPGKAR 38
>02_01_0079 + 554635-556098
Length = 487
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 309 RREADAKCVGTSYTSL*VEELEP 241
RR D +C GTS+T L EL P
Sbjct: 464 RRYDDFECDGTSFTKLDKRELTP 486
>01_06_1742 -
39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 25.4 bits (53), Expect = 9.2
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +1
Query: 94 AAAKQSPYTALIARSST--TDV--AGVRDEKNFPRPVRLTEPGKVRLGFIPEEWFQFFHS 261
A + S Y +I R + D+ A VR E + + E G + GF+P E +H
Sbjct: 462 ARQEDSQYILMIERGNVKQNDLISAIVRSETSMVKIASSRESGNLSPGFVPNEEINEYH- 520
Query: 262 KTGVTG 279
G TG
Sbjct: 521 -VGTTG 525
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,043,376
Number of Sequences: 37544
Number of extensions: 177408
Number of successful extensions: 521
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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