Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C01
         (310 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42187| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.77 
SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.8  
SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.4  
SB_9532| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.1  
SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)                 27   4.1  
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)                   26   5.4  
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_44276| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_33589| Best HMM Match : Trypsin (HMM E-Value=0)                     26   5.4  
SB_27086| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-14)                 26   5.4  
SB_12305| Best HMM Match : NAF1 (HMM E-Value=8)                        26   5.4  
SB_2079| Best HMM Match : Pkinase (HMM E-Value=4.2e-10)                26   5.4  
SB_16668| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_8941| Best HMM Match : VWA (HMM E-Value=0)                          26   7.2  
SB_56700| Best HMM Match : rve (HMM E-Value=1.1e-11)                   25   9.5  
SB_33167| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_17442| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_11113| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_45520| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  

>SB_42187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 189 WSWEVLLITHTSNICGGASGNKCCV 115
           W   +L +THTSN CG + G+   +
Sbjct: 34  WGIIILRVTHTSNQCGSSRGSNATI 58


>SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1113

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 187 PVRLTEPGKVRLGFIPEEWFQFF--HSKTGVTGPY 285
           PVRL +PG+ R+  + E     F  H K   +GPY
Sbjct: 34  PVRLQKPGETRIPTVNESDVMRFLSHQKQTASGPY 68


>SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 96  CGQTVPVHSTYCQKLHHRCCW 158
           CG   PV   +   LHH+ CW
Sbjct: 794 CGDPYPVELIFGPLLHHQSCW 814


>SB_9532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 175 SSHHAHQQHLWWSFWQ*VLCTGTVWPQLNVKLRVIA 68
           SSHH H   +W SF++ + C G ++  LN + ++ A
Sbjct: 265 SSHHGHGISMWISFYE-IYC-GQLFDLLNGREKLFA 298


>SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)
          Length = 231

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 189 WSWEVLLITHTSNICGGA 136
           W W++ L T+  +ICGG+
Sbjct: 49  WPWQISLRTNGQHICGGS 66


>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
          Length = 619

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 101 PNSPRTQHLLPEAPPQM 151
           P +P  QH  PEAPPQ+
Sbjct: 67  PPTPLVQHPEPEAPPQL 83


>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 775

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 101 PNSPRTQHLLPEAPPQM 151
           P +P  QH  PEAPPQ+
Sbjct: 726 PPTPLVQHPEPEAPPQL 742


>SB_44276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -2

Query: 303 EADAKCVGTSYTSL*VEELEPFFR---NESESHFTRFSEPDWSWEVLLITHTSNICGG 139
           E  +K  G+ Y S+ V+    ++    ++  S +T F+ P W  ++   T  S++C G
Sbjct: 141 EVLSKLSGSEYFSI-VDARSGYWNIKLDQESSLYTTFNSPPWKIQIPTTTLWSDLCSG 197


>SB_33589| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 289

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 189 WSWEVLLITHTSNICGGASGNK 124
           W W+V L+ + +  CGG+  N+
Sbjct: 65  WPWQVALLMNGTQFCGGSLVNE 86


>SB_27086| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-14)
          Length = 349

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 179 KFFSSRTPATSVVELLAISAVYGDCLAAAERKATRDSIFMRK 54
           K F  +TP T +V+L  I A+ G C+        RD+ F R+
Sbjct: 181 KLFIGQTPPTWLVQLGLICAIAGSCVNPV-IYTIRDATFARE 221


>SB_12305| Best HMM Match : NAF1 (HMM E-Value=8)
          Length = 400

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 130 ARSSTTDVAGVRDEKNFPRPVRLTEPGKVRLGFIP 234
           A ++  D+ G  D  N P P+   +PG   LG  P
Sbjct: 312 AENAIDDIFGDDDPFNIPEPLPALDPGDSLLGLDP 346


>SB_2079| Best HMM Match : Pkinase (HMM E-Value=4.2e-10)
          Length = 210

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 227 NPSLTLPGSVSL--TGLGKFFSSRTPATSVVEL 135
           N  +T  G V L   GLG+FFSS+T A   +++
Sbjct: 143 NVFITATGVVKLGDLGLGRFFSSKTTAAHSLDI 175



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = -3

Query: 242 HSSGMNPS---LTLPGSVSL--TGLGKFFSSRTPA 153
           HS  + P+   +T  G V L   GLG+FFSS+T A
Sbjct: 171 HSLDIKPANVFITATGVVKLGDLGLGRFFSSKTTA 205


>SB_16668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 64  KMLSRVALRSAAAKQSPYTALIARSSTTDVAGVRDEKNFPRPVRLTEPGK 213
           K+ S   L + +  Q+ + A   +SSTT  A  R  K  P P      GK
Sbjct: 11  KLFSSEVLMTLSQVQNMHLANRRKSSTTSTANRRSYKTEPPPNEAERSGK 60


>SB_8941| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2180

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 7    GFVLRSTYFTRFTVVNLRIKMLSRVALRSAAAKQSPYTALIARSSTTDV-AGVRDEKN 177
            GF + ++    +  +  ++  + R+A R   + Q  + ALI+ SS   V AG  DE++
Sbjct: 1299 GFAVDTSSDVSYHCIQKQLSFIKRLAARLNVSPQQSHFALISYSSFGRVLAGFSDEQS 1356


>SB_56700| Best HMM Match : rve (HMM E-Value=1.1e-11)
          Length = 1140

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +1

Query: 4   RGFVLRSTYFTRFTVVNLRIKMLSRVALRSAAAKQSPYTALIARSSTTDVAGVRDEKNFP 183
           R FVL++T       +  R + L+     + AAKQ     L+     T  A     KN P
Sbjct: 632 RLFVLKATLLVSLIGLYTRRRELAAAFTSTPAAKQRATDPLVVADDVTPPANAEQIKNRP 691


>SB_33167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 101 PNSPRTQHLLPEAPPQM 151
           P++P T H+ PE+P Q+
Sbjct: 283 PSNPETAHVQPESPTQL 299


>SB_17442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 199 TEPGKVRLGFIPEEWFQFFHS 261
           T+  K+ L F+P+ WF F  S
Sbjct: 183 TKDWKITLDFLPKAWFHFVFS 203


>SB_11113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 249 LEPFFRNESESHFTRFSEPDWSWEVLLITHTSNI 148
           LEP+  +ESE      +   W  EVL + HT +I
Sbjct: 184 LEPWEDDESEPEDNEPNMLSWQHEVLWVLHTISI 217


>SB_45520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 227 NPSLTLPGSVSL--TGLGKFFSSRTPA 153
           N  +T  G V L   GLG+FFSS+T A
Sbjct: 6   NVFITATGVVKLGDLGLGRFFSSKTTA 32


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 72  ITRSFTFSCGQTVPVH 119
           +TRS  F+C Q +P H
Sbjct: 512 VTRSLPFTCSQALPAH 527


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,387,922
Number of Sequences: 59808
Number of extensions: 197269
Number of successful extensions: 601
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)