Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_C01
         (310 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   2.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   2.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   2.6  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   2.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   2.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   3.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   4.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   4.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   4.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   7.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    20   7.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    20   7.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   7.8  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -3

Query: 179 KFFSSRTPATSVVELLAISAV---YGDCLAAAERKATRDSIFMRKFTT 45
           + +S +    ++ E+LA   +   Y DC   A    T DS+F +   T
Sbjct: 21  ELYSDKYDYVNIDEILANDRLRNQYYDCFIDAGSCLTPDSVFFKSHIT 68


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 151 VAGVRDEKNFPRPVRLTEPGK 213
           + G  DE+  P P  L  PGK
Sbjct: 371 INGRADEEAAPAPQHLIHPGK 391


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 151 VAGVRDEKNFPRPVRLTEPGK 213
           + G  DE+  P P  L  PGK
Sbjct: 371 INGRADEEAAPAPQHLIHPGK 391


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -3

Query: 179 KFFSSRTPATSVVELLAISAV---YGDCLAAAERKATRDSIFMRKFTT 45
           + +S +    ++ E+LA   +   Y DC   A    T DS+F +   T
Sbjct: 21  ELYSDKYDYVNIDEILANDRLRNQYYDCFIDAGSCLTPDSVFFKSHIT 68


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 151 VAGVRDEKNFPRPVRLTEPGK 213
           + G  DE+  P P  L  PGK
Sbjct: 309 INGRADEEAAPAPQHLIHPGK 329


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 181 GSSSHHAHQQH 149
           GSS HH H  H
Sbjct: 331 GSSPHHQHGNH 341


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 172 KNFPRPVRLTEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGL 303
           K+F R V  T+P K +    P   +     K  +T     GV L
Sbjct: 239 KSFVRKVHATKPPKPQTKTKPTSPYHVSDHKAAITVGVIMGVFL 282


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -2

Query: 69   HFYA*IHHCKSRKICRP 19
            H Y  ++HC   + C P
Sbjct: 1687 HMYEELNHCAPNRRCPP 1703


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +3

Query: 18  TVDIFYEIYSGEFTHKNAITRSFTFSCGQTVPVHSTYCQK 137
           T  I+     G    +N     F+ SC    P+ S  CQ+
Sbjct: 508 TAPIYTLKRKGLIKSENEAADFFSGSCAPGAPLDSKLCQQ 547


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +3

Query: 18  TVDIFYEIYSGEFTHKNAITRSFTFSCGQTVPVHSTYCQK 137
           T  I+     G    +N     F+ SC    P+ S  CQ+
Sbjct: 508 TAPIYTLKRKGLIKSENEAADFFSGSCAPGAPLDSKLCQQ 547


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +3

Query: 18  TVDIFYEIYSGEFTHKNAITRSFTFSCGQTVPVHSTYCQK 137
           T  I+     G    +N     F+ SC    P+ S  CQ+
Sbjct: 508 TAPIYTLKRKGLIKSENEAADFFSGSCAPGAPLDSKLCQQ 547


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 251 NWNHSSGMNPSLTLPGSV 198
           N ++ SGM P   +PGS+
Sbjct: 422 NMSNMSGMPPLPNMPGSM 439


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 283  RDQLHQSLSGRTGTIL 236
            R  LH++L GRT  ++
Sbjct: 1146 RAALHEALRGRTAQLI 1161


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 5/5 (100%), Positives = 5/5 (100%)
 Frame = -2

Query: 195 PDWSW 181
           PDWSW
Sbjct: 112 PDWSW 116


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 5/5 (100%), Positives = 5/5 (100%)
 Frame = -2

Query: 195 PDWSW 181
           PDWSW
Sbjct: 112 PDWSW 116


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 181 GSSSHHAHQQHLWWSFWQ 128
           GS+S       L+W +WQ
Sbjct: 558 GSNSAVFTNYKLYWRYWQ 575


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,177
Number of Sequences: 438
Number of extensions: 1710
Number of successful extensions: 18
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)