Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B24
         (121 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     19   3.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    19   4.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    19   4.7  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    19   6.2  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    18   8.1  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        18   8.1  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund
          protein.
          Length = 301

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
 Frame = +2

Query: 41 ECTHFSTPPFRPP---PVG 88
          +CT  S+ P RPP   PVG
Sbjct: 30 DCTTASSWPGRPPKRAPVG 48


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = +2

Query: 38  GECTHFSTPPFRPPPVGGMT*AGQPAGG 121
           G   H   PP + PP+      GQ   G
Sbjct: 195 GANMHQQGPPHQQPPIQQQPNQGQQPPG 222


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = +2

Query: 38  GECTHFSTPPFRPPPVGGMT*AGQPAGG 121
           G   H   PP + PP+      GQ   G
Sbjct: 197 GANMHQQGPPHQQPPIQQQPNQGQQPPG 224


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 8/24 (33%), Positives = 9/24 (37%)
 Frame = +2

Query: 2   HEASSCNGPAGMGECTHFSTPPFR 73
           H   SC     M   TH    PF+
Sbjct: 141 HRVLSCKSALQMHYRTHTGERPFK 164


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = -1

Query: 52  VCTLPHPRWA 23
           + T P P WA
Sbjct: 404 ISTTPRPEWA 413


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 6/18 (33%)
 Frame = +2

Query: 59  TPPFRP------PPVGGM 94
           TPP  P      PP+GGM
Sbjct: 421 TPPEAPLFQNVLPPIGGM 438


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,960
Number of Sequences: 336
Number of extensions: 515
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 20
effective length of database: 115,865
effective search space used:  2201435
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)