Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B24
         (121 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    23   5.6  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    23   7.4  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    23   7.4  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    23   7.4  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    23   7.4  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    22   9.8  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    22   9.8  

>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 14  SCNGPAGMGECTHFSTPP 67
           S N P G+GE    S PP
Sbjct: 551 SSNAPVGLGEVESKSVPP 568


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 104 LPRSCLLREAGEKVG 60
           LPR CLL + G  VG
Sbjct: 236 LPRLCLLAQGGTAVG 250


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 101 PRSCLLREAGEKVGLRSVY 45
           P  C+L +AG + G +S+Y
Sbjct: 334 PEVCILLDAGTRPGDQSIY 352


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 49  TLLNPTFSPASRRRHDLGRSAS 114
           TL NP+ +  +R+ HD+ + +S
Sbjct: 920 TLKNPSINSINRQTHDVEKESS 941


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 109 LTCLGHASYGR 77
           L C+GH S+GR
Sbjct: 7   LECIGHGSFGR 17


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 13  VVQWPSGDGGVYTLLNPTFSPASRRRH 93
           ++ W   + GV  +L+ T S   RR+H
Sbjct: 220 LLHWMIHENGVIGILDATNSTHERRKH 246


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 30  RGWGSVHTSQPHLFARLP 83
           RG  S+H    HL  RLP
Sbjct: 150 RGGSSIHVLIQHLIRRLP 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,099
Number of Sequences: 5004
Number of extensions: 7486
Number of successful extensions: 27
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 20
effective length of database: 2,262,398
effective search space used: 42985562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)