Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B24
         (121 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0715 - 5542648-5543219,5543352-5543544                           29   0.70 
01_06_1204 + 35402747-35404705                                         26   3.7  
10_03_0036 - 7286425-7286463,7286686-7286974,7287306-7288192,728...    26   4.9  
09_01_0133 - 1998528-1998566,1998672-1998710,1998796-1998946,199...    26   4.9  
03_05_0844 + 28139996-28140736                                         26   4.9  
11_04_0041 - 12690287-12690816,12691087-12691378                       25   6.5  
11_03_0217 - 11828305-11828343,11828449-11828487,11828573-118288...    25   8.6  

>01_01_0715 - 5542648-5543219,5543352-5543544
          Length = 254

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 56  STPPFRPPPVGGMT*AGQPAGG 121
           S PP  PPP GG   A  PAGG
Sbjct: 187 SPPPPPPPPAGGNFTAPSPAGG 208


>01_06_1204 + 35402747-35404705
          Length = 652

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 8   ASSCNGPAGMGECTHFSTPPFRPPPVGGMT*AGQPA 115
           A +  G AG GE +  ++PP  PPP      A  PA
Sbjct: 57  AVAAAGGAGAGEHSVPASPPMPPPPAVPPAVAAMPA 92


>10_03_0036 -
           7286425-7286463,7286686-7286974,7287306-7288192,
           7288280-7288726,7288805-7288830,7288984-7289512
          Length = 738

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 1   ARGLVVQWPSGDGGVYTLLNPTFSPASR 84
           ARG  +QWP     +     PT +P SR
Sbjct: 407 ARGTFIQWPKDLIEIRVTARPTTAPGSR 434


>09_01_0133 -
           1998528-1998566,1998672-1998710,1998796-1998946,
           1999185-1999337,1999416-2000302,2000390-2000836,
           2000915-2001190,2001215-2001622
          Length = 799

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 1   ARGLVVQWPSGDGGVYTLLNPTFSPASR 84
           ARG  +QWP     +     PT +P SR
Sbjct: 450 ARGTFIQWPKDLIEIRVTARPTTAPGSR 477


>03_05_0844 + 28139996-28140736
          Length = 246

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 10  LVVQWPSGDGGVYTLLNPTFSPASRRRHDLGRS 108
           L  +W    GGV     PT + A RR+  LG S
Sbjct: 49  LARRWAKAAGGVRAPPTPTLAKAERRQAPLGLS 81


>11_04_0041 - 12690287-12690816,12691087-12691378
          Length = 273

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 100 LGHASYGRRAKRWG*EVCTLPHPRW 26
           LGH+ YG +AK+    +  +PHP +
Sbjct: 56  LGHSLYGWKAKKITFPMVFVPHPNY 80


>11_03_0217 -
           11828305-11828343,11828449-11828487,11828573-11828861,
           11828944-11829114,11829193-11830079,11830167-11830346,
           11830692-11831399
          Length = 770

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 1   ARGLVVQWPSGDGGVYTLLNPTFSPASR 84
           ARG  +QWP     +     PT +P  R
Sbjct: 369 ARGTFIQWPKDLIEIRVTARPTIAPGGR 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,066,593
Number of Sequences: 37544
Number of extensions: 92664
Number of successful extensions: 399
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 20
effective length of database: 14,042,468
effective search space used: 266806892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)