Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_B24
(121 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53141-4|AAA96106.1| 528|Caenorhabditis elegans Mutator protein... 28 0.80
U64840-7|AAB04965.1| 340|Caenorhabditis elegans Hypothetical pr... 27 1.4
AF125963-6|AAK95885.1| 520|Caenorhabditis elegans Hypothetical ... 27 2.4
AF125955-10|AAV58866.1| 578|Caenorhabditis elegans Hypothetical... 26 4.3
AF125955-9|AAV58865.1| 597|Caenorhabditis elegans Hypothetical ... 26 4.3
AF125955-8|AAD14712.1| 623|Caenorhabditis elegans Hypothetical ... 26 4.3
U49945-4|AAC47924.1| 535|Caenorhabditis elegans Hypothetical pr... 25 7.5
S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein. 25 7.5
S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein. 25 7.5
AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated... 25 7.5
AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated... 25 7.5
AF101312-1|AAC69221.3| 813|Caenorhabditis elegans Hypothetical ... 25 9.9
AF038608-17|AAC25822.2| 425|Caenorhabditis elegans Hypothetical... 25 9.9
>U53141-4|AAA96106.1| 528|Caenorhabditis elegans Mutator protein 14
protein.
Length = 528
Score = 28.3 bits (60), Expect = 0.80
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 4 RGLVVQWPSGDGGVYTLLNPTFSPASRRR 90
RGLVV+ P+G G Y L P A + R
Sbjct: 131 RGLVVEAPTGIGKTYAFLIPAIEAALKNR 159
>U64840-7|AAB04965.1| 340|Caenorhabditis elegans Hypothetical
protein ZC317.1 protein.
Length = 340
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 4 RGLVVQWPSGDGGVYTLLNPTFSPASRRR 90
RGLVV+ P+G G Y L P A R
Sbjct: 31 RGLVVEAPTGIGKTYAFLIPAIEAALENR 59
>AF125963-6|AAK95885.1| 520|Caenorhabditis elegans Hypothetical
protein Y38A10A.6 protein.
Length = 520
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 4 RGLVVQWPSGDGGVYTLLNPTFSPASRRR 90
RGL+V P+G G Y L P A R R
Sbjct: 130 RGLLVDAPTGIGKTYAFLIPAIEIALRER 158
>AF125955-10|AAV58866.1| 578|Caenorhabditis elegans Hypothetical
protein F46E10.1c protein.
Length = 578
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -3
Query: 86 LREAGEKVGLRSVYTPP 36
LR A EKVG+R++ TPP
Sbjct: 112 LRYAIEKVGIRALITPP 128
>AF125955-9|AAV58865.1| 597|Caenorhabditis elegans Hypothetical
protein F46E10.1b protein.
Length = 597
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -3
Query: 86 LREAGEKVGLRSVYTPP 36
LR A EKVG+R++ TPP
Sbjct: 131 LRYAIEKVGIRALITPP 147
>AF125955-8|AAD14712.1| 623|Caenorhabditis elegans Hypothetical
protein F46E10.1a protein.
Length = 623
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -3
Query: 86 LREAGEKVGLRSVYTPP 36
LR A EKVG+R++ TPP
Sbjct: 157 LRYAIEKVGIRALITPP 173
>U49945-4|AAC47924.1| 535|Caenorhabditis elegans Hypothetical
protein C02H7.1 protein.
Length = 535
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 29 AGMGECTHFSTPPFRPPPVGGMT*AG 106
+GMGE P RPP + MT AG
Sbjct: 285 SGMGESPRMIKPEDRPPLIRPMTGAG 310
>S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein.
Length = 919
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 74 GEKVGLRSVYTPPSPLGHCTT 12
GEK+ S Y P PL H TT
Sbjct: 408 GEKISSCSQYFEPPPLPHSTT 428
>S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein.
Length = 947
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 74 GEKVGLRSVYTPPSPLGHCTT 12
GEK+ S Y P PL H TT
Sbjct: 436 GEKISSCSQYFEPPPLPHSTT 456
>AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated
protein 5, isoform b protein.
Length = 567
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 74 GEKVGLRSVYTPPSPLGHCTT 12
GEK+ S Y P PL H TT
Sbjct: 408 GEKISSCSQYFEPPPLPHSTT 428
>AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated
protein 5, isoform a protein.
Length = 919
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 74 GEKVGLRSVYTPPSPLGHCTT 12
GEK+ S Y P PL H TT
Sbjct: 408 GEKISSCSQYFEPPPLPHSTT 428
>AF101312-1|AAC69221.3| 813|Caenorhabditis elegans Hypothetical
protein F56E10.2 protein.
Length = 813
Score = 24.6 bits (51), Expect = 9.9
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 62 PPFRPPPVGGMT 97
PP PPP+GG+T
Sbjct: 331 PPPPPPPIGGLT 342
>AF038608-17|AAC25822.2| 425|Caenorhabditis elegans Hypothetical
protein C09G12.9 protein.
Length = 425
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 62 PPFRPPPVGGMT*AGQPAGG 121
PP RPPPV T +GG
Sbjct: 238 PPPRPPPVTAQTSVSSSSGG 257
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,581,671
Number of Sequences: 27780
Number of extensions: 58515
Number of successful extensions: 222
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,740,198
effective HSP length: 20
effective length of database: 12,184,598
effective search space used: 231507362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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