Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B23
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    26   1.4  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   1.4  
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   1.4  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   1.8  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   3.2  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      25   3.2  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    24   4.3  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    24   4.3  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    24   4.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   4.3  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    24   4.3  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    24   5.6  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    23   7.5  
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    23   7.5  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    23   7.5  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    23   7.5  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    23   9.9  

>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
 Frame = -1

Query: 299 EVNRSLPADISEEF----GLANFLPSTWARYWQSQ*QNDSYFGVKKRCYDCPLET 147
           +V    P DISEE     G+A   P  W    Q      SY  +K    +CP+ T
Sbjct: 327 DVKEKRPGDISEELREALGIAPGAPPPWLFAMQRYGPPPSYPDLKIPGVNCPIPT 381


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -1

Query: 137 TILSTSMQNNSRQQFKYCINVQFTGEYNNSYENI-RDSNKF--IEDPR 3
           +I +TS+ + S+  FKY + +  + E   S EN+ R+ N +  +ED +
Sbjct: 226 SIKNTSLSHFSKFNFKYALPIHMSLENRRSLENLFRNMNTWDILEDTK 273


>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = -1

Query: 155 LETHFCTILSTSMQNNSRQQFKYCINVQFTGEYNNSYENI 36
           +E++ CT+ ++  Q +      YC    F+    ++Y N+
Sbjct: 34  VESYACTVHASRFQKSYSASIDYCQRFLFSSNLKHNYVNL 73


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -3

Query: 243 SAIYLG---SLLAKSIAERQLFRRKETMLRLST 154
           +A+ LG   S LAK I +RQL  R ET++  ST
Sbjct: 359 AALLLGVDSSTLAKWIVKRQLKTRSETIITSST 391


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = -1

Query: 182 VKKRCYDCPLETHF---CTILSTS 120
           V+K CY+C  + HF   CT+ S S
Sbjct: 185 VRKFCYNCASDEHFGDDCTLPSRS 208


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 112 ITRDNNLNTVSMYNLPANITTVT 44
           ++R +NL++  MYN P NI  V+
Sbjct: 264 LSRYDNLSSWGMYNSPTNIRQVS 286


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 9/45 (20%), Positives = 21/45 (46%)
 Frame = -2

Query: 172 DATIVHWRLIFAQYYPLQCKITRDNNLNTVSMYNLPANITTVTKI 38
           +  +++ +     YY  QC + +D+N   +  +  P  +  V K+
Sbjct: 444 ECPLLNIKTAILNYYQKQCSLVKDSNEEGLKNFVSPNTLLDVFKV 488


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 158 PLETHFCT-ILSTSMQNNSRQQFKYCINVQFTGEYNNSYENIRDSNKFIEDPR 3
           P+ T   T I S +     +Q+ K  +    T +YN+  EN+    +F   P+
Sbjct: 299 PMHTQRQTFIFSATFDEGLQQRLKKNMKGNITEKYNSPMENMLKEVRFFGKPK 351


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -1

Query: 194 SYFGVKKRCYDCPLETHFCTILSTSMQNNSRQQFKYCINVQFTGEYNNSYENIRD 30
           SYF  K+RCYD  L    C+     M++++       +       +   +EN+ D
Sbjct: 450 SYFVTKQRCYDL-LTDLVCSSQDLMMEHSNDFSTMPTMIASIAVAFQTLFENVCD 503


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 95  IVVASYFALKWIILCKNESPVDNRSIVSLRRNSCRSA 205
           I+   YF++ WI  C+         I S  +N   SA
Sbjct: 213 IITVDYFSIYWISKCEISKCTTTEDIFSYLKNLIPSA 249


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 268 ARNLDLQTFCHLLGLAIGKVNSRTTAIS--A*RNDATIVHWRLIFAQYYPLQCKITRDNN 95
           A N+     C+L+G A+G    +   +S          +++R+    YY  +C + RD++
Sbjct: 515 ALNIYFMIICNLIGFAVGIDGIKNVLVSFFLTLKGKKFIYFRICITNYY--RCNV-RDSS 571

Query: 94  LNTV 83
           +  V
Sbjct: 572 IYNV 575


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 170 CYDCPLETHFCTILSTSMQNNSRQQFKY 87
           C D  L   FCT ++ S++   +   KY
Sbjct: 290 CLDLGLSGEFCTAVAHSIREQCQMYIKY 317


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 116 QNNSRQQFKYC--INVQFTGEYNNSYENI 36
           +NN    + YC  +N  F+G+Y  S EN+
Sbjct: 249 ENNLNTSY-YCKFLNSWFSGDYQQSVENL 276


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 254 LANFLPSTWARYWQSQ*QNDSYFGV 180
           + N  PS+WA Y+Q    + SY GV
Sbjct: 7   ILNDAPSSWALYFQDG-ASPSYLGV 30


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 185 GVKKRCYDCPLETHFCTILSTS 120
           GV+ + Y CP+E     I +T+
Sbjct: 58  GVQAKAYSCPIENRSAVIETTN 79


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +3

Query: 147 SLQWTIVASFLYAEIAVVLLLTLPIASPSRWQKVCKSKFLAYISGQ 284
           S+  ++ +S++Y+ I   L     ++  + WQ +  + +  YI G+
Sbjct: 425 SIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGE 470


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 119 LKWIILCKNESPVDNRSIVSLRRNSCRSAIDFANSE 226
           L  ++L  N SP+D  SI ++  N C+  I  +  E
Sbjct: 375 LSKLLLDTNISPLDASSIATIIYNMCKFKITKSEHE 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,260,689
Number of Sequences: 5004
Number of extensions: 23444
Number of successful extensions: 74
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)