Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_B23
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0317 - 7414477-7414555,7414646-7414701,7415877-7416024,741... 33 0.043
02_05_0658 + 30676990-30677388 27 3.7
01_06_1539 + 38107108-38109649,38110563-38110915 26 4.9
01_03_0315 + 14947450-14948284,14948439-14948540,14948656-149488... 26 4.9
08_02_0558 + 18668856-18668926,18669064-18669175,18669834-186698... 26 6.5
07_03_0722 + 20946201-20947327,20949531-20950791 26 6.5
06_01_1196 + 10289708-10289823,10290828-10291541,10291614-102920... 26 6.5
04_04_0901 - 29247518-29247634,29248990-29250273 26 6.5
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736... 25 8.6
07_01_1029 - 8902771-8902805,8903135-8903256,8904097-8904425,890... 25 8.6
06_01_0499 - 3581145-3582425 25 8.6
04_03_0113 + 11388585-11388655,11388741-11388852,11390182-113902... 25 8.6
>03_02_0317 -
7414477-7414555,7414646-7414701,7415877-7416024,
7416376-7416380,7416512-7416594,7416707-7416878
Length = 180
Score = 33.1 bits (72), Expect = 0.043
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 144 MSLQWTIVASFLYAEIAVVLLLTLPIASPSRWQKV 248
M+LQW I+A + AE AV ++LTLP R Q V
Sbjct: 1 MALQWMILACVVAAEAAVAVMLTLPAPRAVRKQIV 35
>02_05_0658 + 30676990-30677388
Length = 132
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 144 MSLQWTIVASFLYAEIAVVLLLTLP 218
M+L+W ++ AE ++LLLTLP
Sbjct: 1 MALEWVVLGYAAGAEAIMLLLLTLP 25
>01_06_1539 + 38107108-38109649,38110563-38110915
Length = 964
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = -1
Query: 152 ETHFCTILSTSMQNNSRQQFKYCINVQFTGEYNNSYENIRDSNKF 18
E +F + N++ QF ++ F+GE+ +SY + + +F
Sbjct: 341 ENYFSGEFPRFLCQNNKLQFLLALDNNFSGEFPSSYSSCKTLQRF 385
>01_03_0315 +
14947450-14948284,14948439-14948540,14948656-14948840,
14949444-14949654,14949816-14949999,14950108-14950258,
14950371-14950679
Length = 658
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 174 FLYAEIAVVLLLTLPIASPSRWQKVC---KSKFLAYISGQASIYFL 302
F ++V+LLL LP+A+ WQ VC + K+ + + QA+I L
Sbjct: 4 FTRPAMSVLLLLFLPLAAAQPWQ-VCQDSRGKYTSNSTYQANIQSL 48
>08_02_0558 +
18668856-18668926,18669064-18669175,18669834-18669887,
18670121-18670191,18670291-18670372,18670463-18670559,
18670928-18670998
Length = 185
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 123 SG*YCAKMSLQWTIVASFLYAEIAVVLL 206
SG YC +M +W ++ YA I ++L
Sbjct: 132 SGKYCLRMPNKWNFSFNYFYASIFFMVL 159
>07_03_0722 + 20946201-20947327,20949531-20950791
Length = 795
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 168 ASFLYAEIAVVLLLTLPIASPSRWQKVCKS 257
A+ L ++ V +L LP+ S R+++VC+S
Sbjct: 12 AASLTDDLVVEILRRLPVRSVCRFKRVCRS 41
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 168 ASFLYAEIAVVLLLTLPIASPSRWQKVCKS 257
A+ L ++ V +L LP+ S R+++VC+S
Sbjct: 430 AASLTDDLVVEILRRLPVRSVCRFKRVCRS 459
>06_01_1196 +
10289708-10289823,10290828-10291541,10291614-10292058,
10292329-10293642
Length = 862
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 132 YCAKMSLQWTIVASF-LYAEIAVVL 203
YC+K+S W+I+ S ++AE V L
Sbjct: 429 YCSKISFDWSIIRSLTMFAERPVEL 453
>04_04_0901 - 29247518-29247634,29248990-29250273
Length = 466
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 127 PLQCKITRDNNLNTVSMYNLPANITTVTKIS 35
PL T +NN N V M P+N +T T S
Sbjct: 218 PLTAATTPNNNNNAVGMTRSPSNSSTSTASS 248
>08_02_1458 -
27270834-27271320,27271752-27271961,27272627-27273624,
27274099-27274195,27274278-27274393,27274465-27274590,
27275123-27275233,27275347-27275428,27275844-27275989,
27276457-27276650,27277277-27277388,27277869-27278001,
27278295-27278437,27278488-27278562,27278830-27278937,
27279072-27279197,27279752-27279836,27280358-27280440,
27280545-27280625,27280709-27280789,27281960-27282034,
27282112-27282498,27282902-27283036
Length = 1396
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 1 ARGSSINLFESRIFS*LLLYSPVNCTLIQYLNCC 102
AR S+I++F +FS L L + + YL+ C
Sbjct: 521 ARHSNIHIFLQMVFSALALAQSIKGYALSYLSSC 554
>07_01_1029 -
8902771-8902805,8903135-8903256,8904097-8904425,
8905435-8905530,8906126-8906257,8907244-8907348,
8907630-8907803,8908094-8908163,8908263-8908444,
8908669-8908778,8909778-8909882,8909965-8910043,
8910342-8910382,8910511-8910589,8910856-8910966
Length = 589
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +3
Query: 141 KMSLQWTIVASFLYAEIAVVLLLTLPIASPSRWQKVCKSKFLAYI 275
+ L W I+ ++A I L L + + ++CKS++ ++
Sbjct: 75 RYELLWVILIGLIFALIIQSLAANLGVVTGRHLAEICKSEYPKFV 119
>06_01_0499 - 3581145-3582425
Length = 426
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 186 EIAVVLLLTLPIASPSRWQKVCKS 257
+I +LL LP+ S R++ VCKS
Sbjct: 36 DIVEEILLRLPVKSVLRFRSVCKS 59
>04_03_0113 +
11388585-11388655,11388741-11388852,11390182-11390235,
11390386-11390456,11390560-11390641,11390741-11390837,
11390914-11391053
Length = 208
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 132 YCAKMSLQWTIVASFLYAEIAVVLLLTLPIA 224
YC +M +W F YA I + L + +P+A
Sbjct: 135 YCLRMPNKWNFSFDFFYASI-LSLAIYVPVA 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,546,579
Number of Sequences: 37544
Number of extensions: 132929
Number of successful extensions: 386
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -