Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_B23
(302 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF304120-1|AAG50233.1| 213|Caenorhabditis elegans 4D656 protein. 55 1e-08
AC024817-36|AAF59580.1| 213|Caenorhabditis elegans Hypothetical... 55 1e-08
U58752-7|AAB00669.1| 343|Caenorhabditis elegans Hypothetical pr... 30 0.37
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 29 0.64
AF098992-15|AAN39673.1| 340|Caenorhabditis elegans Hypothetical... 27 3.4
AF098992-14|AAD34669.1| 346|Caenorhabditis elegans Hypothetical... 27 3.4
AF098992-13|AAN39672.1| 385|Caenorhabditis elegans Hypothetical... 27 3.4
Z70308-11|CAA94343.4| 378|Caenorhabditis elegans Hypothetical p... 26 4.5
U40060-4|AAY86193.1| 406|Caenorhabditis elegans Hypothetical pr... 26 4.5
U29488-10|AAK93843.1| 813|Caenorhabditis elegans Dnaj domain (p... 26 4.5
AF016449-7|AAG24000.2| 350|Caenorhabditis elegans Hypothetical ... 26 4.5
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 26 6.0
U41107-2|AAK73880.1| 111|Caenorhabditis elegans Temporarily ass... 26 6.0
U29381-3|AAA68758.2| 617|Caenorhabditis elegans Hypothetical pr... 26 6.0
AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ... 26 6.0
AC087079-12|AAK27874.2| 472|Caenorhabditis elegans Hypothetical... 26 6.0
Z82071-5|CAB04919.2| 514|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z82071-3|CAH04734.1| 336|Caenorhabditis elegans Hypothetical pr... 25 7.9
U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical pr... 25 7.9
AY204181-1|AAO39185.1| 336|Caenorhabditis elegans nuclear recep... 25 7.9
AY204180-1|AAO39184.1| 514|Caenorhabditis elegans nuclear recep... 25 7.9
AL110478-13|CAC14397.1| 514|Caenorhabditis elegans Hypothetical... 25 7.9
AF003389-10|AAC71135.2| 289|Caenorhabditis elegans Hypothetical... 25 7.9
>AF304120-1|AAG50233.1| 213|Caenorhabditis elegans 4D656 protein.
Length = 213
Score = 54.8 bits (126), Expect = 1e-08
Identities = 25/51 (49%), Positives = 32/51 (62%)
Frame = +3
Query: 144 MSLQWTIVASFLYAEIAVVLLLTLPIASPSRWQKVCKSKFLAYISGQASIY 296
M+LQWTIVA LYAEIA+ L LP P+ W K+ KS+ ++ A IY
Sbjct: 1 MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIY 51
>AC024817-36|AAF59580.1| 213|Caenorhabditis elegans Hypothetical
protein Y54G2A.18 protein.
Length = 213
Score = 54.8 bits (126), Expect = 1e-08
Identities = 25/51 (49%), Positives = 32/51 (62%)
Frame = +3
Query: 144 MSLQWTIVASFLYAEIAVVLLLTLPIASPSRWQKVCKSKFLAYISGQASIY 296
M+LQWTIVA LYAEIA+ L LP P+ W K+ KS+ ++ A IY
Sbjct: 1 MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIY 51
>U58752-7|AAB00669.1| 343|Caenorhabditis elegans Hypothetical
protein B0218.7 protein.
Length = 343
Score = 29.9 bits (64), Expect = 0.37
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 122 KWIILCKNESPVDNRSIVSLRRNSCRSAIDFANSEPK*MAESLQ 253
+W I + +P+DN +I++L + A++ A+ P AESLQ
Sbjct: 79 QWFIFVPSSAPLDNTTIITLSHD----AVNLASIPPTDSAESLQ 118
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -1
Query: 152 ETHFCTI--LSTSMQNNSRQQFKYCINVQFTGEYN 54
E HFC I L M N +K+CI F G YN
Sbjct: 320 EGHFCLIKNLDKLMNNRGSSSYKFCIRC-FNGYYN 353
>AF098992-15|AAN39673.1| 340|Caenorhabditis elegans Hypothetical
protein F53C3.13c protein.
Length = 340
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 138 AKMSLQWTIVASFLYAEIAVVLLLTLPIASPSRWQKVCKSKFLAYISGQASIYFL 302
+K++ Q IV L I ++L+L + W+K C+++F Y S++ L
Sbjct: 54 SKVTRQMLIVVGLL---IPILLILATELFRTLAWEKKCETEFKTYHVRNHSVHRL 105
>AF098992-14|AAD34669.1| 346|Caenorhabditis elegans Hypothetical
protein F53C3.13a protein.
Length = 346
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 138 AKMSLQWTIVASFLYAEIAVVLLLTLPIASPSRWQKVCKSKFLAYISGQASIYFL 302
+K++ Q IV L I ++L+L + W+K C+++F Y S++ L
Sbjct: 54 SKVTRQMLIVVGLL---IPILLILATELFRTLAWEKKCETEFKTYHVRNHSVHRL 105
>AF098992-13|AAN39672.1| 385|Caenorhabditis elegans Hypothetical
protein F53C3.13b protein.
Length = 385
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 138 AKMSLQWTIVASFLYAEIAVVLLLTLPIASPSRWQKVCKSKFLAYISGQASIYFL 302
+K++ Q IV L I ++L+L + W+K C+++F Y S++ L
Sbjct: 54 SKVTRQMLIVVGLL---IPILLILATELFRTLAWEKKCETEFKTYHVRNHSVHRL 105
>Z70308-11|CAA94343.4| 378|Caenorhabditis elegans Hypothetical
protein F49E11.2 protein.
Length = 378
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Frame = +3
Query: 84 TVFKLLSRVILH*SG*YCAKMSLQWTIVASFLY-----------AEIAVVLLLTLPIASP 230
T+ + S V++ + + S + ++A FLY + IAV++L + + P
Sbjct: 82 TLADIFSSVLIAAASLFANSYSASYMVLALFLYICTFGVIQLTSSHIAVIILRQISVTRP 141
Query: 231 SRWQKVCKSKFLAYISG 281
+Q +C + L+ I G
Sbjct: 142 YGFQSICSIRRLSLIVG 158
>U40060-4|AAY86193.1| 406|Caenorhabditis elegans Hypothetical
protein F38B6.8 protein.
Length = 406
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 157 HWRLIFAQYYPLQCKITRDNNLNTVSMYN 71
H+ +F PL C+ N NTVS YN
Sbjct: 248 HYHYVFPLNMPLYCRELTVFNHNTVSEYN 276
>U29488-10|AAK93843.1| 813|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 8 protein.
Length = 813
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 166 TIVHWRLIFAQYYPLQCKITRDNNLNT 86
T+ W+L F+ Y+P +++R N ++T
Sbjct: 718 TLCGWKLYFSIYHPKHVELSRRNFIDT 744
>AF016449-7|AAG24000.2| 350|Caenorhabditis elegans Hypothetical
protein C50H11.13 protein.
Length = 350
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +3
Query: 153 QWTIVASFLYAEIAVVLLLTLPIASPSRWQKVCKSK----FLAYI 275
+WT + L+ + + LLTLPI + +C+SK FL Y+
Sbjct: 25 EWTNSSRLLFYSVISISLLTLPILLLTFCYILCRSKRNAHFLPYL 69
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +1
Query: 49 LLLYSPVNCTLIQYLNCC---RELFCIEV 126
LLL CTL+ +L CC RE +C+ V
Sbjct: 55 LLLVIGSLCTLLGFLGCCGAIRENYCLTV 83
>U41107-2|AAK73880.1| 111|Caenorhabditis elegans Temporarily
assigned gene nameprotein 234 protein.
Length = 111
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 92 KYCINVQFTGEYNNSY 45
KYC+ + TG YNN Y
Sbjct: 46 KYCMKIFQTGSYNNIY 61
>U29381-3|AAA68758.2| 617|Caenorhabditis elegans Hypothetical
protein F35D11.3 protein.
Length = 617
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +3
Query: 198 VLLLTLPI-ASPSRWQKVC 251
V+LL P+ ASP W KVC
Sbjct: 460 VILLGAPVTASPKEWSKVC 478
>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
protein Y71A12B.4 protein.
Length = 1913
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 217 GKVNSRTTAISA*RNDATIVHWRLIFAQYYPLQCKIT 107
G+ + SA N T++ WR I + YY K+T
Sbjct: 1859 GREGQQELGNSADWNIETVIDWRKIVSMYYQANGKLT 1895
>AC087079-12|AAK27874.2| 472|Caenorhabditis elegans Hypothetical
protein Y37E3.13 protein.
Length = 472
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 192 AVVLLLTLPIASPSRWQKVCKSKFLA 269
A +LLL LPI S S K CKS +++
Sbjct: 4 AALLLLFLPIISCSNAPKTCKSFWIS 29
>Z82071-5|CAB04919.2| 514|Caenorhabditis elegans Hypothetical
protein W05B5.3a protein.
Length = 514
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 197 RSAIDFANSEPK*MAESLQVQIPRLYQRASFDLL 298
++AIDFANS P ++ + Q Q L Q + FD++
Sbjct: 262 KAAIDFANSIPAFLSIT-QTQRVHLLQNSVFDVM 294
>Z82071-3|CAH04734.1| 336|Caenorhabditis elegans Hypothetical
protein W05B5.3b protein.
Length = 336
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 197 RSAIDFANSEPK*MAESLQVQIPRLYQRASFDLL 298
++AIDFANS P ++ + Q Q L Q + FD++
Sbjct: 84 KAAIDFANSIPAFLSIT-QTQRVHLLQNSVFDVM 116
>U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical protein
C28G1.4 protein.
Length = 1081
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 185 GVKKRCYDCPLETHFCTILSTSMQNNSRQQ 96
G +C C TH + + MQNN R++
Sbjct: 1024 GALIKCSFCEYHTHVASEMGLHMQNNHRKE 1053
>AY204181-1|AAO39185.1| 336|Caenorhabditis elegans nuclear receptor
NHR-85 protein.
Length = 336
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 197 RSAIDFANSEPK*MAESLQVQIPRLYQRASFDLL 298
++AIDFANS P ++ + Q Q L Q + FD++
Sbjct: 84 KAAIDFANSIPAFLSIT-QTQRVHLLQNSVFDVM 116
>AY204180-1|AAO39184.1| 514|Caenorhabditis elegans nuclear receptor
NHR-85 protein.
Length = 514
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 197 RSAIDFANSEPK*MAESLQVQIPRLYQRASFDLL 298
++AIDFANS P ++ + Q Q L Q + FD++
Sbjct: 262 KAAIDFANSIPAFLSIT-QTQRVHLLQNSVFDVM 294
>AL110478-13|CAC14397.1| 514|Caenorhabditis elegans Hypothetical
protein W05B5.3a protein.
Length = 514
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 197 RSAIDFANSEPK*MAESLQVQIPRLYQRASFDLL 298
++AIDFANS P ++ + Q Q L Q + FD++
Sbjct: 262 KAAIDFANSIPAFLSIT-QTQRVHLLQNSVFDVM 294
>AF003389-10|AAC71135.2| 289|Caenorhabditis elegans Hypothetical
protein F23H11.7 protein.
Length = 289
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 177 LYAEIAVVLLLTLPIASPSRWQKVCKSKFLAYISGQASI 293
L+ AV+L + I PS+ + S F+AY+ S+
Sbjct: 151 LFKPFAVLLNYNVIIGQPSQTVNLTSSSFVAYLDNSTSM 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,864,865
Number of Sequences: 27780
Number of extensions: 130927
Number of successful extensions: 357
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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