Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B22
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...   154   4e-39
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...   154   4e-39
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    26   1.5  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   2.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   4.5  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    24   6.0  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    24   7.9  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  154 bits (373), Expect = 4e-39
 Identities = 67/112 (59%), Positives = 86/112 (76%)
 Frame = +3

Query: 15  LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYCLRQLKKFKKTTGEIVSSKE 194
           LKEY+V+GRK+P+E EP P L++MR+F+P+  VAKSR+WY L+ + K KK TGEIV+  E
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 195 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHR 350
           I E  P+K K FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHR
Sbjct: 63  ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHR 114


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  154 bits (373), Expect = 4e-39
 Identities = 67/112 (59%), Positives = 86/112 (76%)
 Frame = +3

Query: 15  LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYCLRQLKKFKKTTGEIVSSKE 194
           LKEY+V+GRK+P+E EP P L++MR+F+P+  VAKSR+WY L+ + K KK TGEIV+  E
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62

Query: 195 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHR 350
           I E  P+K K FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHR
Sbjct: 63  ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHR 114


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 165 TTGEIVSSKEIPEKSPVKIKNFGIWLRYESRSGVHNMYR 281
           T+G  +S+   P       K++ I  R  S SGVH++ R
Sbjct: 458 TSGASISNTSSPHSEASISKDYEILKRRRSNSGVHSLTR 496


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 18  KEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWY 134
           +E  V+   +  E     P   +R +SP+ ++  S FWY
Sbjct: 470 QEILVLKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWY 508


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 260  RARLVTQPDTKVLNLNRTLFWNFFAGYNFTS-SLFELLQLPQA 135
            +A     PD   +N+ +TL  NFF    +    + +L Q+ +A
Sbjct: 2124 KANAFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLYQMSEA 2166


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 158 ELLQLPQAIPETRFCHNRIRRENPHFV 78
           +L+  PQ   E RF  N IR  NP  V
Sbjct: 173 DLIWKPQGRQEERFADNPIRVVNPDIV 199


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 276 YREYRDLSVGGAVTQCYRDMGARH 347
           Y +Y+D+S G  V +    MGA H
Sbjct: 204 YLKYQDVSTGQLVAEHRTGMGASH 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,432,238
Number of Sequences: 5004
Number of extensions: 27893
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)