Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B22
         (352 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   165   1e-41
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr...    31   0.23 
Z69787-6|CAA93637.1|  341|Caenorhabditis elegans Hypothetical pr...    29   0.94 
Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    28   1.6  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    28   1.6  
AF239999-1|AAF63495.1|  203|Caenorhabditis elegans MDF-2 protein.      28   1.6  
AC084158-32|AAM15619.1|  116|Caenorhabditis elegans Mad (yeast m...    28   1.6  
AC084158-31|AAK68576.1|  203|Caenorhabditis elegans Mad (yeast m...    28   1.6  
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    28   2.2  
AF040661-8|AAG24222.1|  327|Caenorhabditis elegans Hypothetical ...    28   2.2  
Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical...    27   3.8  
Z70210-5|CAA94155.1|  312|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical...    27   5.0  
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U88177-2|AAB42291.1|  358|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ...    26   6.6  
Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF022980-4|AAG24191.1|  335|Caenorhabditis elegans Serpentine re...    26   8.7  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  165 bits (400), Expect = 1e-41
 Identities = 68/112 (60%), Positives = 92/112 (82%)
 Frame = +3

Query: 15  LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYCLRQLKKFKKTTGEIVSSKE 194
           L EY V+GRK+P+E EP  P++KM+IF+ + ++AKSRFWY +  L++ KK  GEI+S K+
Sbjct: 10  LNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQ 69

Query: 195 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHR 350
           + EK+P  +KN+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHR
Sbjct: 70  VFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHR 121


>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical protein
            C35C5.6 protein.
          Length = 1224

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 208  LFSGISLL-DTISPVVFLNFFNCLKQYQKRDFATIGSGEKILI 83
            L S +SLL   + P + L+FF   KQY   D  T+G G+ + +
Sbjct: 1080 LLSSVSLLKQLVLPAISLDFFVNGKQYVSEDDVTVGIGQFVTV 1122


>Z69787-6|CAA93637.1|  341|Caenorhabditis elegans Hypothetical
           protein C44C10.7 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 171 GEIVSSKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGG 308
           G I+ +  +   +PVKI +FGI  R+ +R G H +    RD+   G
Sbjct: 184 GNILFASRLTPTAPVKIVDFGIGRRFANRRG-HPIPSPSRDIDFLG 228


>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 150 KKFKKTTGEIVSSKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVG 305
           KKF   TGE +    + EK     K   +W      S VH ++ ++ +L+VG
Sbjct: 506 KKFSSYTGESLEGHALVEKIMAHAKTGILWFFDNYNSSVHFIFDDF-ELNVG 556


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 129  WYCLRQLKKFKKTTGEIVSSKEIPEKSP 212
            W C   L  F KT  E  S ++IP K+P
Sbjct: 1271 WACADSLATFMKTVMEYTSHEQIPIKTP 1298


>AF239999-1|AAF63495.1|  203|Caenorhabditis elegans MDF-2 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 81  KMRIFSPDPIVAKSRFWYCLRQLKKFKKTTGEIVSSKEIPEK 206
           K++ F  DP++ +  +W   RQLK+      E V +KE+ E+
Sbjct: 59  KLQAFM-DPLLQQVEYWLAKRQLKRLVMVISE-VKTKEVVER 98


>AC084158-32|AAM15619.1|  116|Caenorhabditis elegans Mad (yeast
           mitosis arrest deficient)related protein 2, isoform b
           protein.
          Length = 116

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 81  KMRIFSPDPIVAKSRFWYCLRQLKKFKKTTGEIVSSKEIPEK 206
           K++ F  DP++ +  +W   RQLK+      E V +KE+ E+
Sbjct: 59  KLQAFM-DPLLQQVEYWLAKRQLKRLVMVISE-VKTKEVVER 98


>AC084158-31|AAK68576.1|  203|Caenorhabditis elegans Mad (yeast
           mitosis arrest deficient)related protein 2, isoform a
           protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 81  KMRIFSPDPIVAKSRFWYCLRQLKKFKKTTGEIVSSKEIPEK 206
           K++ F  DP++ +  +W   RQLK+      E V +KE+ E+
Sbjct: 59  KLQAFM-DPLLQQVEYWLAKRQLKRLVMVISE-VKTKEVVER 98


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 153 KFKKTTGEIVSSKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAV 314
           K KK         E   K   +I N   W+R+    G+  + +EY+D   GG++
Sbjct: 235 KLKKKKSVTCDEAEFSGKKKKEIIN--AWIRHVLSIGIEGLKKEYQDSPNGGSI 286


>AF040661-8|AAG24222.1|  327|Caenorhabditis elegans Hypothetical
           protein W10G11.16 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 105 PIVAKSRFWYCLRQLKKFKKTTGEIVSSKEIPEKSPVKIKNFGIWLRYESRSG 263
           P   KS  + CLR + + K+  G  ++   IP    +     G+WL  E   G
Sbjct: 144 PNERKSGAFSCLRAVFRLKRDVGFHIAQTYIPTSLALMFSWVGVWLPEEFMEG 196


>Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical
           protein F54G8.3 protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 141 RQLKKFKKTTGEIVSSKEIPEKSPVKIKNFGIWLRYESRSGVHNMYRE-YRDLSVG 305
           + ++KF+K   +++   ++P   P  +++FG      S SG  +M    Y DL +G
Sbjct: 433 KNIEKFRKKPAQVIKGNDLPNLPPGGMRSFGF-----SLSGGSDMDENGYPDLLIG 483


>AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical
           protein Y56A3A.16 protein.
          Length = 619

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 9   GELKEYEVIGRKLPSESEPK-PPLYKMRIFSPDPIVAKSRFWY 134
           G  +E  ++    PS S P  PP Y+ +      IV  S FW+
Sbjct: 73  GTSEENSLLSPDSPSSSTPNFPPQYESQNLKESVIVRNSIFWF 115


>Z70210-5|CAA94155.1|  312|Caenorhabditis elegans Hypothetical
           protein K08H2.5 protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 177 IVSSKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 299
           ++ +K I   SP K+ ++G+  ++ +R G +   R  RD++
Sbjct: 156 VLFAKTITPASPCKLIDYGVGKKFRNRRGNYVKNRPQRDVN 196


>AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.7 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +3

Query: 213 VKIKNFGIWLRYESR---SGVHNMYR 281
           V +K+FGI LRY S+   S VH  Y+
Sbjct: 121 VAVKDFGILLRYASKLHISSVHTCYK 146


>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 254 RLVTQPDTKVLNLNRTLFWNFFAGYNFTSSLFELLQLPQAIPETRF 117
           +L+ + DT+  +     FW+FF     T   F+   LP+   E +F
Sbjct: 727 KLILECDTETKSFLIPFFWDFFLITLCTLYAFKTRNLPENFNEAKF 772


>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 254 RLVTQPDTKVLNLNRTLFWNFFAGYNFTSSLFELLQLPQAIPETRF 117
           +L+ + DT+  +     FW+FF     T   F+   LP+   E +F
Sbjct: 727 KLILECDTETKSFLIPFFWDFFLITLCTLYAFKTRNLPENFNEAKF 772


>U88177-2|AAB42291.1|  358|Caenorhabditis elegans Hypothetical
           protein F53E10.5 protein.
          Length = 358

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 48  PSESEPKPPLYKMRIFSPDPI 110
           P+E +P+PP Y +    PDP+
Sbjct: 69  PTEIDPRPPSYTVNENHPDPM 89


>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y42A5A.1 protein.
          Length = 1045

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 60  EPKPPLYKMRIFSPDPIVAKSR-FWYCLRQLKKF 158
           EP+  ++K+ IF  DP+  K + FW    Q K F
Sbjct: 649 EPEKQVWKIPIFYDDPVSGKHKVFWLTDTQPKVF 682


>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical
           protein F57C7.1b protein.
          Length = 1087

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 144 QLKKFKKTTGEIVSSKEIPEKSPVKIK 224
           Q  K ++    IV+S+E+P+K P  +K
Sbjct: 177 QAVKMEEVEEPIVASEEVPDKKPESVK 203


>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical
           protein F57C7.1a protein.
          Length = 1209

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 144 QLKKFKKTTGEIVSSKEIPEKSPVKIK 224
           Q  K ++    IV+S+E+P+K P  +K
Sbjct: 177 QAVKMEEVEEPIVASEEVPDKKPESVK 203


>AF022980-4|AAG24191.1|  335|Caenorhabditis elegans Serpentine
           receptor, class j protein50 protein.
          Length = 335

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 194 FFAGYNFTSSLFELLQLPQAIPETRFC 114
           FFA YN T S+F ++  P  I   R+C
Sbjct: 46  FFATYNLTFSVFNIV-FPMDIHTYRYC 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,852,371
Number of Sequences: 27780
Number of extensions: 155258
Number of successful extensions: 537
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)