Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_B21
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0045 + 11929624-11929890,11930500-11930551,11932683-119331... 30 0.94
08_02_1602 - 28148255-28149413,28151927-28152087 29 1.6
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 29 1.6
04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019 29 1.6
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 29 1.6
07_03_1095 + 23926977-23927657 29 2.2
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 28 2.9
03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131 27 5.0
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413 27 6.6
10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573 27 8.7
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361 27 8.7
03_02_0880 - 12103703-12103726,12103938-12104210,12104389-121049... 27 8.7
02_05_1174 + 34692085-34692283,34693336-34693622,34693995-34694504 27 8.7
02_05_0202 + 26708049-26709074 27 8.7
>01_03_0045 +
11929624-11929890,11930500-11930551,11932683-11933103,
11933574-11934162
Length = 442
Score = 29.9 bits (64), Expect = 0.94
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 107 RTLKLARRLKPPYRMRQSVSLNRNP 181
R L++ RRL PPYR + +L R P
Sbjct: 151 RVLQMRRRLSPPYRACTAAALRRRP 175
>08_02_1602 - 28148255-28149413,28151927-28152087
Length = 439
Score = 29.1 bits (62), Expect = 1.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 10 YQCQVCGKGYIESSSYKKHMK 72
+ CQVCGKG+ ++ + HM+
Sbjct: 258 HYCQVCGKGFKRDANLRMHMR 278
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 295 SPQQQRRYKCGLCVKTYMYLHSLRKHMLTH 384
SP +R+Y+C C KT+ +L H+ H
Sbjct: 456 SPASKRKYECSECHKTFSTHQALGGHVAAH 485
>04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019
Length = 486
Score = 29.1 bits (62), Expect = 1.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 10 YQCQVCGKGYIESSSYKKHMK 72
+ CQVCGKG+ ++ + HM+
Sbjct: 322 HYCQVCGKGFKRDANLRMHMR 342
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 4 RGYQCQVCGKGYIESSSYKKHMK 72
R + C C KGY S YK H+K
Sbjct: 129 RQWVCARCAKGYAVQSDYKAHLK 151
>07_03_1095 + 23926977-23927657
Length = 226
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 307 QRRYKCGLCVKTYMYLHSLRKHMLTH 384
QR Y+C +C K Y +L HM H
Sbjct: 94 QRAYECSVCGKVYWCYQALGGHMTCH 119
>11_06_0061 -
19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 28.3 bits (60), Expect = 2.9
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = +3
Query: 195 GRTARATKSSGGFRTTSSSDRDPSVAGSNPGGELPPTAAPLQVRTVRQD 341
GR R T+ G + SSS R P G GE PP A +V VR D
Sbjct: 17 GRVRRWTRPPKGSQC-SSSPRSPRPGGGGVEGEQPPLAPGTEVE-VRVD 63
>03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131
Length = 391
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 237 TTSSSDRDPSVAGSNPGGELPPTAAPLQVRTVRQDLHVPA 356
+ S+S SVA S+P PP +PL+ +R L A
Sbjct: 26 SASASPESVSVAASSPAQAAPPAGSPLRPFALRAHLREEA 65
>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
Length = 533
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 4 RGYQCQVCGKGYIESSSYKKHMK 72
R + C C K Y S YK H+K
Sbjct: 141 RQWACSRCSKAYAVHSDYKAHLK 163
>10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573
Length = 409
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 10 YQCQVCGKGYIESSSYKKHMK 72
++C+ CGK Y S +K H+K
Sbjct: 124 WRCERCGKRYAVHSDWKAHVK 144
>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
Length = 504
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 4 RGYQCQVCGKGYIESSSYKKHMK 72
R + C C K Y S YK H+K
Sbjct: 142 RQWACARCSKAYAVHSDYKAHLK 164
>03_02_0880 -
12103703-12103726,12103938-12104210,12104389-12104931,
12105017-12105374,12105696-12105994,12106116-12106189,
12106630-12106717,12107573-12107674,12107813-12107841,
12108118-12108235
Length = 635
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 225 GGFRTTSSSDRDPSVAGSNPGGELPPTAAPLQVRTVRQDLHVPAQ 359
GG + SD PS +NP PP PL+ + + + VP Q
Sbjct: 92 GGINSHHHSDNVPSKVSANPKVPPPPKIEPLKPKA--KSVPVPVQ 134
>02_05_1174 + 34692085-34692283,34693336-34693622,34693995-34694504
Length = 331
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 198 RTARATKSSGGFRTTSSSDRDPSVAGSNPGGELPPTAA 311
R+A A K+ GG + SSS DP+ AG + P + A
Sbjct: 198 RSAAAIKA-GGCYSNSSSSHDPAAAGHHSPPPFPASLA 234
>02_05_0202 + 26708049-26709074
Length = 341
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 298 PQQQRRYKCGLCVKTYMYLHSLRKHMLTHV 387
P+++ R++C C K + +L H +HV
Sbjct: 192 PEKRTRFQCPACKKVFRSYQALGGHRASHV 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.130 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,065,121
Number of Sequences: 37544
Number of extensions: 142269
Number of successful extensions: 642
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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