Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B21
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    29   0.030
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    29   0.030
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    25   0.37 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    25   0.37 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   0.48 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.0  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 28.7 bits (61), Expect = 0.030
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 301 QQQRRYKCGLCVKTYMYLHSLRKHMLTH 384
           Q ++ + C  C K Y+ L +L+ H+ TH
Sbjct: 12  QAKKSFSCKYCEKVYVSLGALKMHIRTH 39



 Score = 22.6 bits (46), Expect = 2.0
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +1

Query: 4  RGYQCQVCGKGYIESSSYKKHMK 72
          + + C+ C K Y+   + K H++
Sbjct: 15 KSFSCKYCEKVYVSLGALKMHIR 37



 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 319 KCGLCVKTYMYLHSLRKHMLTH 384
           KC LC K +     L+ H+ TH
Sbjct: 44  KCHLCGKAFSRPWLLQGHIRTH 65


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 0.030
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 307 QRRYKCGLCVKTYMYLHSLRKHMLTH 384
           ++ Y C +C K++ Y H L+ H + H
Sbjct: 229 EKPYTCDICGKSFGYNHVLKLHQVAH 254



 Score = 27.9 bits (59), Expect = 0.052
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 304 QQRRYKCGLCVKTYMYLHSLRKHMLTH 384
           ++R YKC +C + + +   L +HM  H
Sbjct: 144 KERPYKCDVCERAFEHSGKLHRHMRIH 170



 Score = 27.5 bits (58), Expect = 0.069
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 307 QRRYKCGLCVKTYMYLHSLRKHMLTH 384
           +R +KC +C KT++    L  HM TH
Sbjct: 173 ERPHKCTVCSKTFIQSGQLVIHMRTH 198



 Score = 25.8 bits (54), Expect = 0.21
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 316 YKCGLCVKTYMYLHSLRKHMLTH 384
           Y+C +C KT+     L +H  TH
Sbjct: 92  YRCNICGKTFAVPARLTRHYRTH 114



 Score = 25.8 bits (54), Expect = 0.21
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 10  YQCQVCGKGYIESSSYKKHMK 72
           Y C+ CGKG+  S   K H +
Sbjct: 204 YVCKACGKGFTCSKQLKVHTR 224



 Score = 25.4 bits (53), Expect = 0.28
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 10  YQCQVCGKGYIESSSYKKHMK 72
           YQC +C K + + + Y+ H++
Sbjct: 62  YQCLLCQKAFDQKNLYQSHLR 82



 Score = 25.0 bits (52), Expect = 0.37
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 4   RGYQCQVCGKGYIESSSYKKHMK 72
           R Y+C VC + +  S    +HM+
Sbjct: 146 RPYKCDVCERAFEHSGKLHRHMR 168



 Score = 25.0 bits (52), Expect = 0.37
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 4   RGYQCQVCGKGYIESSSYKKHMK 72
           R ++C VC K +I+S     HM+
Sbjct: 174 RPHKCTVCSKTFIQSGQLVIHMR 196



 Score = 23.0 bits (47), Expect = 1.5
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +1

Query: 304 QQRRYKCGLCVKTYMYLHSLRKHMLTH 384
           +++ Y+C LC K +   +  + H+ +H
Sbjct: 58  EEKTYQCLLCQKAFDQKNLYQSHLRSH 84



 Score = 22.6 bits (46), Expect = 2.0
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +1

Query: 10  YQCQVCGKGYIESSSYKKHMK 72
           Y+C +CGK +   +   +H +
Sbjct: 92  YRCNICGKTFAVPARLTRHYR 112



 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 10  YQCQVCGKGYIESSSYKKH 66
           Y C +CGK +  +   K H
Sbjct: 232 YTCDICGKSFGYNHVLKLH 250



 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +1

Query: 307 QRRYKCGLCVKTYMYLHSLRKHMLTH 384
           ++ Y+C  C K++    +L  H   H
Sbjct: 117 EKPYQCEYCSKSFSVKENLSVHRRIH 142



 Score = 21.0 bits (42), Expect = 6.0
 Identities = 6/21 (28%), Positives = 10/21 (47%)
 Frame = +1

Query: 10  YQCQVCGKGYIESSSYKKHMK 72
           YQC+ C K +    +   H +
Sbjct: 120 YQCEYCSKSFSVKENLSVHRR 140



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 307 QRRYKCGLCVKTYMYLHSLRKHMLTH 384
           ++ Y C  C K +     L+ H  TH
Sbjct: 201 EKPYVCKACGKGFTCSKQLKVHTRTH 226


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 25.0 bits (52), Expect = 0.37
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 313 RYKCGLCVKTYMYLHSLRKHM 375
           +Y+C  C     Y HSL+ H+
Sbjct: 44  QYRCANCTYATKYCHSLKLHL 64


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 25.0 bits (52), Expect = 0.37
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 10 YQCQVCGKGYIESSSYKKHM 69
          + CQ+CGK     +S K+H+
Sbjct: 6  FTCQLCGKVLCSKASLKRHV 25


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +1

Query: 307 QRRYKCGLCVKTYMYLHSLRKHMLTH 384
           ++ Y C  C + ++ + +LR+H+  H
Sbjct: 35  EKPYHCSHCDRQFVQVANLRRHLRVH 60



 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 307 QRRYKCGLCVKTYMYLHSLRKHMLTH 384
           ++ ++C  C K +   H L+ HM  H
Sbjct: 7   EKPFECPECHKRFTRDHHLKTHMRLH 32



 Score = 21.8 bits (44), Expect = 3.4
 Identities = 4/21 (19%), Positives = 14/21 (66%)
 Frame = +1

Query: 10  YQCQVCGKGYIESSSYKKHMK 72
           Y C  C + +++ ++ ++H++
Sbjct: 38  YHCSHCDRQFVQVANLRRHLR 58


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 10  YQCQVCGKGYIESSSYKKH 66
           Y C VCGK      + K+H
Sbjct: 372 YTCDVCGKTLSTKLTLKRH 390


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +3

Query: 264 SVAGSNPGGELPPTA-APL 317
           S   S  GG+LPP+A AP+
Sbjct: 399 SAVRSPAGGQLPPSAGAPM 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.130    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,989
Number of Sequences: 438
Number of extensions: 1487
Number of successful extensions: 27
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)