Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B20
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    33   0.018
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...    28   0.51 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   0.88 
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   3.6  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    24   8.2  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 33.1 bits (72), Expect = 0.018
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 187 PDMKSKTPFGQLPVLEIDGKQFTQSTGISRYLGRKYGLAGADLEED 324
           P     +P G+ P++  DG  + +S  I  +L RKYG +    EED
Sbjct: 40  PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEED 85


>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 186 PLVYRYAFVFKLLPAVSEQHALTLTESFQ 100
           PL YRY  +F+L    +E+  L LT+ F+
Sbjct: 191 PLFYRYRVMFRLRNIGNEEAVLALTDGFK 219


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 0.88
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 1   AQGQEADVGYKRLCVSNIQQKLTMPNVVFYYFP 99
           A+   A++ + RLCVSNI   LT  +V   + P
Sbjct: 330 ARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEP 362


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 175 IDQWPDMKSKTPFGQLPVLEIDGK 246
           ID   ++K ++P GQ P LE DG+
Sbjct: 6   IDIKRELKDESPIGQSPHLENDGR 29


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 417 LLFHCLVFLVIDGASGCT 364
           L+ HC   + +DG+SGC+
Sbjct: 4   LIRHCSEEIALDGSSGCS 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.138    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,570,170
Number of Sequences: 5004
Number of extensions: 29754
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)