Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B20
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   2.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   2.4  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   4.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   5.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   9.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   9.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 215 PNGVLDFISGHWSIGT 168
           P  +L  ISG+WS GT
Sbjct: 96  PMALLYEISGNWSFGT 111


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 178 LSVRVCLQTPARRKRATCADSHRV 107
           ++V VC++   RR R  CA + ++
Sbjct: 101 IAVCVCMRKCPRRHRPVCASNGKI 124


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 264 RHQQVPRSQVRTRWCRPRG 320
           RHQ    S+++  W +P+G
Sbjct: 21  RHQSDRYSKLKRNWRKPKG 39


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 205 TPFGQLPVLEIDGKQFTQ 258
           TPF  LP+L++ G+  T+
Sbjct: 183 TPFTVLPLLKVWGRYTTE 200


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 205 TPFGQLPVLEIDGKQFTQ 258
           TPF  LP+L++ G+  T+
Sbjct: 183 TPFTVLPLLKVWGRYTTE 200


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 295 GLAGADLEEDFEIDQNVEFLNDIRA 369
           GL   D  +++   + V+FLND+ A
Sbjct: 174 GLHDLDQSQEYVRSKLVDFLNDLVA 198


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 369 NRWPHLLRERR 401
           + WP LLR+R+
Sbjct: 405 DEWPRLLRKRK 415


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 369 NRWPHLLRERR 401
           + WP LLR+R+
Sbjct: 458 DEWPRLLRKRK 468


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.138    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,436
Number of Sequences: 438
Number of extensions: 1912
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)