Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_B18
(459 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 136 2e-33
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 133 1e-32
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 31 0.064
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 31 0.064
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 29 0.26
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 1.8
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 1.8
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 3.2
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 5.6
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 25 5.6
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 25 5.6
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 24 9.7
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 24 9.7
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 24 9.7
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 24 9.7
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 136 bits (328), Expect = 2e-33
Identities = 68/111 (61%), Positives = 86/111 (77%), Gaps = 2/111 (1%)
Frame = +3
Query: 132 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 311
MS +E V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++GARR+S
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60
Query: 312 WRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLIP 458
WR+ISSIEQK E G+ R+ + KEYR K+E EL +IC+DVL +L+KHLIP
Sbjct: 61 WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIP 111
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 133 bits (321), Expect = 1e-32
Identities = 65/110 (59%), Positives = 83/110 (75%), Gaps = 2/110 (1%)
Frame = +3
Query: 135 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSW 314
+ +E+ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+GARR+SW
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62
Query: 315 RVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLIP 458
R++SSIEQK E G+ + ++ KEYR K+E+EL IC D+L +L+KHLIP
Sbjct: 63 RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIP 112
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 31.5 bits (68), Expect = 0.064
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +3
Query: 135 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARR 305
SV + ++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V
Sbjct: 3 SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61
Query: 306 SSWRVIS 326
S+W S
Sbjct: 62 STWATFS 68
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 31.5 bits (68), Expect = 0.064
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Frame = +3
Query: 126 STMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARR 305
S S EEL+ R + + Y+ MA + E E ++ + LLS Y N
Sbjct: 3004 SDSSAYGEELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDNEAYQAE 3062
Query: 306 SSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREIC--YDVLCL 437
+R+ + +E+ + EY +E+ L++ C Y+ C+
Sbjct: 3063 LFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKECKAYERSCI 3108
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 29.5 bits (63), Expect = 0.26
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +3
Query: 141 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 320
+K+E QR + Q R D M + +G S+ + SV+ + +R S+
Sbjct: 320 EKQEKEQRLFMLAQKAREDRMG---RNAASSGP--SHAKPRSTSVSSEERSRSRAGSFSH 374
Query: 321 ISSIEQKTEGSE---RKQQMAKEYRVKVEKELR 410
S E + E SE R+Q++ +E R + EK+LR
Sbjct: 375 HSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 1.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 282 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 398
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 455 YKVLVQ*TQDIIADFSELLFYFNPIFFCHLL 363
+ L Q ++++I +EL F+ F CHLL
Sbjct: 1755 FHALSQPSRELICKMTELNFFAADFFLCHLL 1785
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 3.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 270 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 404
S +Y + G S W+ I ++ K+ G +R ++ Y +KE
Sbjct: 61 SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.0 bits (52), Expect = 5.6
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Frame = +3
Query: 144 KEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVG-ARRSSWRV 320
KE L +L E + D + A + V NLL + YKNV A +
Sbjct: 608 KEHLYSFLQLVEPSFAKSDSSNATESQISESVRKGISIFNLLFIVYKNVCSQAGINPSTK 667
Query: 321 ISSIEQKTEGSE------RKQQMAKEYRVKVEKELREICYDVLCLLDKHLI 455
+ +++ T E + Q +EY+ K E ELR + LL+ LI
Sbjct: 668 LEDLDEHTLSDELTYITKKFVQKDQEYQTK-EIELRNYKITLQSLLEDKLI 717
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 259 ETFFPLLIKMWSAPDGHHGESFPLLNRKP 345
E F P L++ +A D +GE+ LL R+P
Sbjct: 104 EVFLPQLLRYPNASDPLNGEAAALLLREP 132
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 5.6
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Frame = +3
Query: 141 DKEELVQRAKLAEQA-ERYDDMAAAMK--EVTETGVELSNEERNLLSVAYKNVVGARRSS 311
D ++RA A QA E+ + + +K E+ +L LL V + + R S
Sbjct: 265 DVRSRIERA--ARQAREKNEKLLQNVKTSEIPINAADLEGINPELLPVIEEEIRSFRDQS 322
Query: 312 WRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLI 455
+K + + KEY K +++LR+ D+ LL KH I
Sbjct: 323 ---AMKKREKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRI 367
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 24.2 bits (50), Expect = 9.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 222 VTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAK 377
+ + GVE + N+L ++ V SSWR K E SE + + AK
Sbjct: 381 IQDDGVEQLMQPENILKISSDIVTQGSESSWRA------KAETSEMQLKEAK 426
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 24.2 bits (50), Expect = 9.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 212 DEGSDGNRRRAQQRRKKPSFRCL*KCGRRPTVIMAS 319
DEG ++ Q ++KKPS R + GR+P+ + +S
Sbjct: 108 DEGKAIAPKKKQTKQKKPSVRG--RRGRKPSSLSSS 141
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 8 GHCSISFAAREKPKKFCNLLVNYRFTLPTRASVKS 112
G C+I +A K++C + VN R + + + K+
Sbjct: 742 GECNIQYALNPFTKEYCIIEVNARLSRSSALASKA 776
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 24.2 bits (50), Expect = 9.7
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +3
Query: 198 DMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 323
D+A ++K E ++ +E + SV +K++VG + ++ I
Sbjct: 631 DLAESVKSSAEASAKIVSEIIQVPSVYHKHIVGPKGTTLNAI 672
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,787
Number of Sequences: 5004
Number of extensions: 35242
Number of successful extensions: 114
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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