Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_B17
(381 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006742-5|AAF60496.1| 239|Caenorhabditis elegans Hypothetical ... 31 0.37
AC006742-4|AAF60495.1| 239|Caenorhabditis elegans Hypothetical ... 31 0.37
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z37139-11|CAO82010.1| 487|Caenorhabditis elegans Hypothetical p... 28 2.6
Z34799-9|CAO82035.1| 487|Caenorhabditis elegans Hypothetical pr... 28 2.6
AY661556-1|AAV70493.1| 714|Caenorhabditis elegans acetylcholine... 28 2.6
AF078786-4|AAC26944.4| 714|Caenorhabditis elegans Sodium:neurot... 28 2.6
U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical pr... 27 3.4
U28738-6|AAT92056.1| 274|Caenorhabditis elegans Hypothetical pr... 27 3.4
U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical pr... 27 3.4
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 26 7.9
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 26 7.9
>AC006742-5|AAF60496.1| 239|Caenorhabditis elegans Hypothetical
protein Y38C1AB.7 protein.
Length = 239
Score = 30.7 bits (66), Expect = 0.37
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 35 MNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIK--KQVQENFKPDNVKK 208
+ K ++ A CF+++H D AAS ++ ++ K K++ +NFK + K+
Sbjct: 52 LEKLMVKHFANCFVALHTMNSLDELAASAPKFVADFKQAIGNKKTLKELHDNFKSSDTKQ 111
Query: 209 Q 211
Q
Sbjct: 112 Q 112
>AC006742-4|AAF60495.1| 239|Caenorhabditis elegans Hypothetical
protein Y38C1AB.3 protein.
Length = 239
Score = 30.7 bits (66), Expect = 0.37
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 35 MNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIK--KQVQENFKPDNVKK 208
+ K ++ A CF+++H D AAS ++ ++ K K++ +NFK + K+
Sbjct: 52 LEKLMVKHFANCFVALHTMNSLDELAASAPKFVADFKQAIGNKKTLKELHDNFKSSDTKQ 111
Query: 209 Q 211
Q
Sbjct: 112 Q 112
>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
C38D4.3 protein.
Length = 1784
Score = 27.9 bits (59), Expect = 2.6
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = +2
Query: 95 KRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVDDFNKFMSSMNPNS 268
K D E S N E+E E+K Q QEN + +K F N DDF + P +
Sbjct: 1127 KHDEEKDSEKNVVDEME----EVKDQEQENDECIESEKTFENQ-DDFEVLEDTSAPEA 1179
>Z37139-11|CAO82010.1| 487|Caenorhabditis elegans Hypothetical
protein F34D10.9 protein.
Length = 487
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +2
Query: 110 AASTGNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVDDFNKFMSSMNPNSEA 274
AA+ N F++ ++ + + +++F+ K + N ++DFNKF++S + EA
Sbjct: 176 AANPLNCFTKPDEDLSSLARYRRKSFR----KLRLNFQMEDFNKFLTSRPSDVEA 226
>Z34799-9|CAO82035.1| 487|Caenorhabditis elegans Hypothetical
protein F34D10.9 protein.
Length = 487
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +2
Query: 110 AASTGNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVDDFNKFMSSMNPNSEA 274
AA+ N F++ ++ + + +++F+ K + N ++DFNKF++S + EA
Sbjct: 176 AANPLNCFTKPDEDLSSLARYRRKSFR----KLRLNFQMEDFNKFLTSRPSDVEA 226
>AY661556-1|AAV70493.1| 714|Caenorhabditis elegans
acetylcholine/choline transporter protein.
Length = 714
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -1
Query: 267 ELGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTNCFSI 139
++ +L+++++ S L+ C LT S + F+C F IS + F I
Sbjct: 367 DIWLVLIVDVIVS---LVGCLLTFSAIGFTCYEFAISLDKFHI 406
>AF078786-4|AAC26944.4| 714|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 6
protein.
Length = 714
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -1
Query: 267 ELGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTNCFSI 139
++ +L+++++ S L+ C LT S + F+C F IS + F I
Sbjct: 367 DIWLVLIVDVIVS---LVGCLLTFSAIGFTCYEFAISLDKFHI 406
>U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical
protein T28D9.3a protein.
Length = 341
Score = 27.5 bits (58), Expect = 3.4
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -1
Query: 321 NSYIGIIIISVFFYFGASELGFMLLINL 238
N+++ ++ + + YFG S++GF++ I L
Sbjct: 112 NNHLHVLFVRLLTYFGYSQIGFVMNIAL 139
>U28738-6|AAT92056.1| 274|Caenorhabditis elegans Hypothetical
protein T28D9.3c protein.
Length = 274
Score = 27.5 bits (58), Expect = 3.4
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -1
Query: 321 NSYIGIIIISVFFYFGASELGFMLLINL 238
N+++ ++ + + YFG S++GF++ I L
Sbjct: 113 NNHLHVLFVRLLTYFGYSQIGFVMNIAL 140
>U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical
protein T28D9.3b protein.
Length = 342
Score = 27.5 bits (58), Expect = 3.4
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -1
Query: 321 NSYIGIIIISVFFYFGASELGFMLLINL 238
N+++ ++ + + YFG S++GF++ I L
Sbjct: 113 NNHLHVLFVRLLTYFGYSQIGFVMNIAL 140
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 1 ARGKSCGKRLQNEQTFDYIPGRLLYQRSRFCETRRRSSKHRQR 129
+R +S K + Q +IP L QRSR + S+H R
Sbjct: 252 SRSRSADKASSSRQFDSHIPRHLQQQRSRHDSSSGSESEHETR 294
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 1 ARGKSCGKRLQNEQTFDYIPGRLLYQRSRFCETRRRSSKHRQR 129
+R +S K + Q +IP L QRSR + S+H R
Sbjct: 252 SRSRSADKASSSRQFDSHIPRHLQQQRSRHDSSSGSESEHETR 294
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,451,607
Number of Sequences: 27780
Number of extensions: 98433
Number of successful extensions: 473
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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