Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_B16
(244 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 27 0.26
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 0.46
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 24 2.4
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 23 4.3
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 23 4.3
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 23 4.3
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 23 5.6
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 23 5.6
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 23 5.6
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|... 23 7.5
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces... 23 7.5
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 23 7.5
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 27.5 bits (58), Expect = 0.26
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 100 SPYTRQFKLLWLRKKITQRYYY-SFSTISERD 192
SPYT K L LRK++ Y SF ISE D
Sbjct: 482 SPYTFWSKALELRKELKDAVVYGSFELISEED 513
>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 0.46
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 124 LLWLRKKITQRYYYSFSTISERDICELSLIALY 222
L WL+ T YSF TI +D EL L +Y
Sbjct: 130 LQWLKMLNTIPPSYSFITIKSKDTVELGLEEIY 162
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 76 NILKSHTNSPYTRQFKLLWL--RKKITQRYYYSFSTISERDICE 201
+I S N+ Q L L RKK+ + +Y++ S+ + D C+
Sbjct: 189 SIADSRQNAHIDAQLTTLLLHERKKVVRAFYHAISSRKQCDNCQ 232
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 23.4 bits (48), Expect = 4.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 133 LRKKITQRYYYSFSTISERD 192
L K+T + Y FST+ E D
Sbjct: 93 LGSKVTSKNYNEFSTLEEED 112
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 23.4 bits (48), Expect = 4.3
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 106 YTRQFKLLWLRKKITQRYYYSFSTISERDICELSL 210
Y FK W+R +++ + + F+ I + + +LSL
Sbjct: 2246 YLILFKHAWVRLSVSRLFGHFFAIIGDSNFGKLSL 2280
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 23.4 bits (48), Expect = 4.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 82 LKSHTNSPYTRQFKLLWLRKKITQ 153
L + N T+ L+WL KKIT+
Sbjct: 480 LAAGCNDFLTKPVSLVWLEKKITE 503
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 23.0 bits (47), Expect = 5.6
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +2
Query: 65 PQYITY*NLTQTLLTRVSLNCCGY----VKKLPKDIIIVLVQFRN 187
P+++ Y + L R S+ C GY +++ D I L++ N
Sbjct: 356 PEFVEYASEIDVELVRKSVKCIGYLAIKIEERKNDCIDSLIELMN 400
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 23.0 bits (47), Expect = 5.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 151 QRYYYSFSTISERDICELSLIALYIVLGL 237
+R+ F T E CE +++A + +LGL
Sbjct: 13 KRHLILFPTPYEEHDCERTVLAFFCLLGL 41
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 130 WLRKKITQRYYYSFS 174
W RK ITQ+ +YS S
Sbjct: 488 WTRKGITQKQHYSES 502
>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 22.6 bits (46), Expect = 7.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 130 WLRKKITQRYYYSFSTISERDIC 198
W KK + +YY + S S D+C
Sbjct: 209 WGGKKTSAQYYVNKSGRSAEDVC 231
>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 338
Score = 22.6 bits (46), Expect = 7.5
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +1
Query: 91 HTNSPYTRQFKLLW 132
HT SPY F LW
Sbjct: 266 HTISPYVAAFAFLW 279
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 22.6 bits (46), Expect = 7.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 140 KKLPKDIIIVLVQFRNGIFVSSL 208
K+ +D +IVLV+F N F ++L
Sbjct: 303 KRFFQDSVIVLVEFLNQEFANTL 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 924,967
Number of Sequences: 5004
Number of extensions: 13895
Number of successful extensions: 33
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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