Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B16
         (244 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0116 - 13022648-13022701,13022781-13022835,13023050-130231...    26   3.7  
01_03_0003 + 11509530-11512772                                         25   8.5  

>10_07_0116 -
           13022648-13022701,13022781-13022835,13023050-13023175,
           13023274-13023340,13024104-13024200,13024362-13024461,
           13024527-13024611,13024679-13024755,13024888-13024926,
           13025001-13025038,13025118-13025208,13025536-13025628,
           13025726-13025781,13025844-13025915,13026078-13026134,
           13026397-13026495,13026599-13026964
          Length = 523

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 76  NILKSHTNSPYTRQFKLLWLRKKITQRYYYSFSTISERDICELSLIA 216
           N+L++HT +  TR    L   K    + YYS   +   +  + + +A
Sbjct: 371 NLLRTHTTAVSTRMLYKLAQEKPFAPKRYYSIDRVFRNEAVDRTHLA 417


>01_03_0003 + 11509530-11512772
          Length = 1080

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 104 LTRVSLNCCGYVKKLPKDI 160
           L  + L CC ++ +LPKDI
Sbjct: 663 LQTLDLRCCRFLVELPKDI 681


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,208,095
Number of Sequences: 37544
Number of extensions: 69393
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)