Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B16
         (244 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical...    28   1.0  
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    25   7.1  
Z69787-2|CAA93635.2|  474|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    25   7.1  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    25   7.1  
AC091125-1|AAK27889.2|  313|Caenorhabditis elegans Hypothetical ...    25   9.4  

>AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical
           protein C15F1.1 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 103 PYTRQFKLLWLRKKITQRYYYSFSTISER 189
           P + +F L W +KK TQR   S ST  +R
Sbjct: 54  PNSNKFNLKWKKKKETQRKQCSISTGKDR 82


>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
           protein T22A3.8 protein.
          Length = 3102

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 133 LRKKITQRYYYSFSTIS 183
           L K +T RY+YS S IS
Sbjct: 275 LDKSVTMRYFYSISDIS 291


>Z69787-2|CAA93635.2|  474|Caenorhabditis elegans Hypothetical
           protein C44C10.3 protein.
          Length = 474

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 100 SLCEILICYVLWIFESIL 47
           S+  +L+C   WI ESIL
Sbjct: 149 SIAGVLVCICAWILESIL 166


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
           protein T22A3.8 protein.
          Length = 3102

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 133 LRKKITQRYYYSFSTIS 183
           L K +T RY+YS S IS
Sbjct: 275 LDKSVTMRYFYSISDIS 291


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3102

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 133 LRKKITQRYYYSFSTIS 183
           L K +T RY+YS S IS
Sbjct: 275 LDKSVTMRYFYSISDIS 291


>AC091125-1|AAK27889.2|  313|Caenorhabditis elegans Hypothetical
           protein Y67D2.4 protein.
          Length = 313

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 79  ILKSHTNSPYTRQFKLLWLRK 141
           +L+SH N  Y   F L WL +
Sbjct: 199 VLESHVNLYYLADFLLFWLNR 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,977,641
Number of Sequences: 27780
Number of extensions: 72709
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)