Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B16
         (244 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.31 
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        23   0.54 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   1.2  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        20   3.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   5.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   5.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    19   6.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    19   8.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    19   8.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 0.31
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 15   LTPKFQQYYIINIDSNIHNT*HIKIS 92
            +TP   +++I  IDSN+H    +KIS
Sbjct: 983  VTPFEHRHFISGIDSNLHVYAPLKIS 1008


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 23.0 bits (47), Expect = 0.54
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 146 LPKDIIIVLVQFRNGIF 196
           LPKD+++V   +R G F
Sbjct: 45  LPKDVVVVSSNYRVGAF 61


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 88  SHTNSPYTRQFKLLWLRKKITQR 156
           +H  SP+ RQ  L W+ + +  R
Sbjct: 343 THNMSPWVRQVFLNWMPRLLMMR 365


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 136 RKKITQRYYYSFSTISERDICELSLIA 216
           RKK+   Y+Y +    + D+    L A
Sbjct: 291 RKKVLPYYWYKYQDRRDTDLSRADLEA 317


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 4/9 (44%), Positives = 8/9 (88%)
 Frame = -1

Query: 85  LICYVLWIF 59
           L+CY +W++
Sbjct: 217 LVCYGIWVY 225


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 4/9 (44%), Positives = 8/9 (88%)
 Frame = -1

Query: 85  LICYVLWIF 59
           L+CY +W++
Sbjct: 93  LVCYGIWVY 101


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +2

Query: 5   EVKFNAKISTILHN*YRFKYPQYITY*NLTQTLLTRVSLNCCGYVKKLPKDIII 166
           E  F   IS  L    + + P+Y+    +    LT V +   G+V  +   I+I
Sbjct: 5   EYSFYGNISDELRYLEKVRGPKYLPLTLIVPITLTYVVIFVTGFVGNIITCIVI 58


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 130 WLRKKITQRYYYSFSTIS 183
           +L +K   R+YY+F   S
Sbjct: 465 FLPEKTANRHYYAFVPFS 482


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 229 TQYTRQLKRAHKYPVP 182
           TQY R +K  +  P P
Sbjct: 319 TQYIRHIKSPYHTPEP 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,650
Number of Sequences: 438
Number of extensions: 1027
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)