Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_B15
(402 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 44 9e-06
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 43 2e-05
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo... 41 8e-05
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 28 0.62
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 26 1.9
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 4.4
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 4.4
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 25 5.8
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 5.8
SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch... 24 7.7
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 44.0 bits (99), Expect = 9e-06
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +1
Query: 172 EHLKPEFLKLSPQHTVPTLVD---DGLSIWESRAIITYLVNKYGKGSSL-YPEDARARAL 339
E PE L L+P VPTL+D + +IWES AI+ YL +KY + P D
Sbjct: 40 EQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKYDTERKISLPRDHPEYYK 99
Query: 340 VDQRLYF 360
V Q L+F
Sbjct: 100 VIQYLFF 106
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 42.7 bits (96), Expect = 2e-05
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = +1
Query: 184 PEFLKLSPQHTVPTLVDDGLSIWESRAIITYLVNKYGKGSSLYPEDARARALVDQRLYFD 363
P + KLSP P +VDDG++ ES AI+ +LV KYG ED + ++F
Sbjct: 40 PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWMHFS 99
Query: 364 IGTL 375
+L
Sbjct: 100 EASL 103
>SPCC965.07c |gst2||glutathione S-transferase
Gst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 40.7 bits (91), Expect = 8e-05
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +1
Query: 169 GEHLKPEFLKLSPQHTVPTLVD---DGLSIWESRAIITYLVNKY 291
GE E L L+P VPTLVD + +IWES AI+ YL +KY
Sbjct: 39 GEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAILIYLADKY 82
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 27.9 bits (59), Expect = 0.62
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 235 DGLSIWESRAIITYLVNKYGKGSSLYPEDARARALVDQRLYF 360
+ LSI ESR I + ++G S L+P D + A + RL F
Sbjct: 263 NSLSI-ESRLTIANMTTEWGALSGLFPTDEKLLAWYEDRLKF 303
>SPAC1834.01 |sup45||translation release factor
eRF1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 1.9
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +1
Query: 232 DDGLSIWESRAIITYLVNKYGKGSSL 309
+ + IW+ R ++ L+N +G G+S+
Sbjct: 6 EKAIEIWKIRRLVKQLINCHGNGTSM 31
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.0 bits (52), Expect = 4.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 357 VQALIDERPRSSVFWVEAAALTVLVDQVSDDGARL 253
+QALI PR+ V A AL++L D ++ RL
Sbjct: 1188 LQALIKLTPRNQWSQVRALALSLLSDSLNSTSYRL 1222
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.0 bits (52), Expect = 4.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 287 STVRAAASTQKTLERGRSSISACTLTLVRSTRD 385
STVRA +RG++ I+ ++T+V + RD
Sbjct: 55 STVRAQNLQDLIYKRGQAGITRASVTIVFNNRD 87
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 24.6 bits (51), Expect = 5.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 261 ARLPDREAVID*RRDRVLRTQLQKFR 184
AR+P AV+ RR RVLR L+K+R
Sbjct: 87 ARMPS--AVVWMRRQRVLRRLLRKYR 110
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 24.6 bits (51), Expect = 5.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 169 GEHLKPEFLKLSPQHTVPTLVDDGLSIWESRAIITYLVNKYGKGSS 306
GE+ P ++ QH +P + +DGL +IT+L G G++
Sbjct: 285 GENAGPRKVETIKQHKIPAINEDGLFY-----LITHLPASGGTGAA 325
>SPAC222.08c |||imidazoleglycerol-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 24.2 bits (50), Expect = 7.7
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +1
Query: 226 LVDDGLSIWESRAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTL 375
LVD GL IW + A + L K G P RA + R YF T+
Sbjct: 90 LVDQGLPIWGTCAGMILLSKKSRGGKFPDPYLLRAMDIEVTRNYFGPQTM 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,440,526
Number of Sequences: 5004
Number of extensions: 23573
Number of successful extensions: 53
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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