Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B13
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    42   5e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    36   0.003
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    28   0.71 
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    26   2.2  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    25   5.0  
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    25   6.6  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    24   8.7  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    24   8.7  
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch...    24   8.7  

>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 41.5 bits (93), Expect = 5e-05
 Identities = 17/42 (40%), Positives = 31/42 (73%)
 Frame = +1

Query: 286 KAALIMQVLQLSDEQIALLPPEQRASVLRLKEQIAKSTQQRS 411
           KAALI Q++ L+D+QI +LPP+Q+  +L++++ +  S +  S
Sbjct: 380 KAALIAQLMALTDDQINVLPPDQKERILQIRQALPSSYKTES 421


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = +1

Query: 274 SDQEKAALIMQVLQLSDEQIALLPPEQRASVLRLKEQ 384
           ++ ++ ALI Q+L L+ EQI  LPP QR  +L ++ Q
Sbjct: 323 NEGKRMALIQQLLALTPEQINALPPAQRDQILSIRRQ 359


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 234 SSSSYHTGNSFGSFRSGKGCVDNASAAIIGRTDSVITAGTTSQRP 368
           +S S  T     +FR G      AS A + R+DS  T  T+++RP
Sbjct: 79  ASHSSSTDALLQAFRDGAKPSGTASGADVKRSDSESTEATSNERP 123


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 349 PAVITLSVRPIIAALALSTQPFPDRKLPKEFPVWY 245
           P++  L  + I  +LAL+   FPD++     P WY
Sbjct: 128 PSIFELQAQKIKKSLALARAAFPDQEASISIP-WY 161


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 234 SSSSYHTGNSFGSFRSGKGCVDNASAAIIGRTDSVITAGTTS 359
           SSSS    +S  S RSG      +S  I   + SV T+G+++
Sbjct: 536 SSSSRSGSSSSSSSRSGSTSSSGSSHTITSTSQSVHTSGSST 577


>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 312 QHLHYQRSLFLIGSSRRNSLY 250
           QH  Y   LF++ + + NSLY
Sbjct: 173 QHKRYNEILFMVDTCQANSLY 193


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 359 ARCSGGNNAICSSDNCSTCIINAAFS*SEAPEG 261
           A C   +NAI   DNC+T +    +     PEG
Sbjct: 203 AECEN-SNAIVFCDNCNTSVHQNCYGIPFVPEG 234


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 38  TCAVYHPWYLIRCLRR 85
           TCA  HP Y I C RR
Sbjct: 557 TCAKDHPCYSISCPRR 572


>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
           Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 321

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 50  YHPWYLIRCLRRCII-SKILYFPEIPACLVVHRLMSTRVFVQ 172
           Y P Y +  +R   + S++LY  ++PA ++  R+   R  VQ
Sbjct: 124 YLPQYGVDHVRAITVGSEVLYRNDLPADVLAERIYDVRGLVQ 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,960
Number of Sequences: 5004
Number of extensions: 23061
Number of successful extensions: 80
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)