Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B13
         (430 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546...    39   0.001
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    33   0.098
11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536...    30   0.69 
03_02_0835 + 11636213-11636342,11636734-11637185                       29   1.2  
01_06_1763 + 39723596-39723691,39724030-39724672,39724773-397252...    28   3.7  
09_04_0226 - 15859439-15860377                                         27   4.9  
10_08_0909 - 21487512-21487564,21487938-21488292,21489433-214894...    27   6.4  
01_06_0954 - 33322951-33323606,33324213-33325014                       27   8.5  

>05_06_0057 +
           25253497-25253589,25253722-25253799,25254583-25254621,
           25254724-25255263,25255352-25255450,25255614-25255691,
           25255961-25256146,25256240-25256365
          Length = 412

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +1

Query: 295 LIMQVLQLSDEQIALLPPEQRASVLRLKEQI 387
           L+ QVL +S +QI +LPPEQR  VL+L++ +
Sbjct: 380 LVQQVLSMSPDQINMLPPEQRQQVLQLRDML 410


>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 33.1 bits (72), Expect = 0.098
 Identities = 17/38 (44%), Positives = 26/38 (68%)
 Frame = +1

Query: 259 IPSGASDQEKAALIMQVLQLSDEQIALLPPEQRASVLR 372
           +P    D E +AL+ QVLQL+ EQ++ LP EQ+  +L+
Sbjct: 523 VPQLTPDVE-SALLQQVLQLTPEQLSSLPVEQQQQLLQ 559


>11_06_0013 -
           19252779-19252805,19252947-19253090,19253572-19253663,
           19253757-19253835,19253965-19254031,19254163-19254254,
           19254986-19255102,19255254-19255365,19255479-19255594,
           19255680-19255756,19255912-19255993,19256077-19256214,
           19258806-19259009
          Length = 448

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 234 SSSSYHTGNSFGSFRSGKGCVDNASAAIIGRTDSVITAGTTSQR 365
           SSSS H GN+       +G  D+  A ++GR D    A TT QR
Sbjct: 13  SSSSVHGGNNRREEYPKEGADDDVEAGVLGR-DGEAAATTTRQR 55


>03_02_0835 + 11636213-11636342,11636734-11637185
          Length = 193

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 240 LSCTRH-ARRHWLRRQFGLSTRVVCTNTRVDIKRWTTRQAG 121
           LSC +H ARR  L R+F +S+     N     KRW  R AG
Sbjct: 141 LSCLQHRARRLRLLRRFLVSSPAKVENREERKKRWQLRPAG 181


>01_06_1763 +
           39723596-39723691,39724030-39724672,39724773-39725275,
           39725786-39725905,39726356-39726421,39727146-39727256,
           39727650-39727726,39727996-39728063,39728384-39728497,
           39728593-39728774,39728926-39728994,39729294-39729449,
           39729657-39729734
          Length = 760

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +3

Query: 237 SSSYHTGNSFGSFRSGKGCVDNASAAIIGRTDSVITAGTTSQRPQAEGANRQEYSTAF 410
           SSSY +G+ FG     +    +A+  I GR  +  T+  +SQ      A+ +EY +AF
Sbjct: 215 SSSYSSGSLFGKLEGTQSQGYSANNDIFGRFRA--TSKDSSQADGLAYASSREYGSAF 270


>09_04_0226 - 15859439-15860377
          Length = 312

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 255 LYGTSLSCTRHARRHWLRRQFGLSTRVVCTNTRVDIK 145
           L G      R+ RRH LR  + L    V +  RVD++
Sbjct: 69  LIGVLTLPARYERRHLLRMVYALQQPAVASRARVDVR 105


>10_08_0909 -
           21487512-21487564,21487938-21488292,21489433-21489488,
           21491640-21491778,21493519-21493674,21493983-21494171,
           21494403-21494444,21494445-21494699
          Length = 414

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 255 LYGTSLSCTRHARRHWLRRQFGLSTR 178
           LYG SL C +  R+ W R ++ LS R
Sbjct: 308 LYGVSLQCGKTVRQVWDRGKWDLSFR 333


>01_06_0954 - 33322951-33323606,33324213-33325014
          Length = 485

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 350 SGGNNAICSSDNCSTC-IINAAFS 282
           + G++++C+SD C+ C II   FS
Sbjct: 358 AAGSSSLCASDKCAVCRIIRHGFS 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.130    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,221,626
Number of Sequences: 37544
Number of extensions: 171392
Number of successful extensions: 466
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)