Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_B13
(430 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC028239-1|AAH28239.1| 616|Homo sapiens cleavage stimulation fa... 67 3e-11
AY130299-1|AAN05429.1| 616|Homo sapiens tCstF-64 protein. 67 3e-11
AK222574-1|BAD96294.1| 616|Homo sapiens cleavage stimulation fa... 67 3e-11
AB014589-1|BAA31664.1| 547|Homo sapiens KIAA0689 protein protein. 67 3e-11
Z95327-3|CAI42680.1| 577|Homo sapiens cleavage stimulation fact... 65 1e-10
Z83819-6|CAB06072.2| 577|Homo sapiens cleavage stimulation fact... 65 1e-10
M85085-1|AAA35724.1| 577|Homo sapiens cleavage stimulation fact... 65 1e-10
BT009778-1|AAP88780.1| 577|Homo sapiens cleavage stimulation fa... 65 1e-10
BC033135-1|AAH33135.1| 559|Homo sapiens Similar to cleavage sti... 65 1e-10
BC017712-1|AAH17712.1| 577|Homo sapiens cleavage stimulation fa... 65 1e-10
>BC028239-1|AAH28239.1| 616|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
protein.
Length = 616
Score = 66.9 bits (156), Expect = 3e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = +1
Query: 277 DQEKAALIMQVLQLSDEQIALLPPEQRASVLRLKEQIAKST 399
DQEKAALIMQVLQL+ +QIA+LPPEQR S+L LKEQI KST
Sbjct: 573 DQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 613
>AY130299-1|AAN05429.1| 616|Homo sapiens tCstF-64 protein.
Length = 616
Score = 66.9 bits (156), Expect = 3e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = +1
Query: 277 DQEKAALIMQVLQLSDEQIALLPPEQRASVLRLKEQIAKST 399
DQEKAALIMQVLQL+ +QIA+LPPEQR S+L LKEQI KST
Sbjct: 573 DQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 613
>AK222574-1|BAD96294.1| 616|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
variant protein.
Length = 616
Score = 66.9 bits (156), Expect = 3e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = +1
Query: 277 DQEKAALIMQVLQLSDEQIALLPPEQRASVLRLKEQIAKST 399
DQEKAALIMQVLQL+ +QIA+LPPEQR S+L LKEQI KST
Sbjct: 573 DQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 613
>AB014589-1|BAA31664.1| 547|Homo sapiens KIAA0689 protein protein.
Length = 547
Score = 66.9 bits (156), Expect = 3e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = +1
Query: 277 DQEKAALIMQVLQLSDEQIALLPPEQRASVLRLKEQIAKST 399
DQEKAALIMQVLQL+ +QIA+LPPEQR S+L LKEQI KST
Sbjct: 504 DQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 544
>Z95327-3|CAI42680.1| 577|Homo sapiens cleavage stimulation factor,
3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 64.9 bits (151), Expect = 1e-10
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +1
Query: 277 DQEKAALIMQVLQLSDEQIALLPPEQRASVLRLKEQIAKST 399
D EKAALIMQVLQL+ +QIA+LPPEQR S+L LKEQI KST
Sbjct: 534 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 574
>Z83819-6|CAB06072.2| 577|Homo sapiens cleavage stimulation factor,
3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 64.9 bits (151), Expect = 1e-10
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +1
Query: 277 DQEKAALIMQVLQLSDEQIALLPPEQRASVLRLKEQIAKST 399
D EKAALIMQVLQL+ +QIA+LPPEQR S+L LKEQI KST
Sbjct: 534 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 574
>M85085-1|AAA35724.1| 577|Homo sapiens cleavage stimulation factor
protein.
Length = 577
Score = 64.9 bits (151), Expect = 1e-10
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +1
Query: 277 DQEKAALIMQVLQLSDEQIALLPPEQRASVLRLKEQIAKST 399
D EKAALIMQVLQL+ +QIA+LPPEQR S+L LKEQI KST
Sbjct: 534 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 574
>BT009778-1|AAP88780.1| 577|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 64.9 bits (151), Expect = 1e-10
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +1
Query: 277 DQEKAALIMQVLQLSDEQIALLPPEQRASVLRLKEQIAKST 399
D EKAALIMQVLQL+ +QIA+LPPEQR S+L LKEQI KST
Sbjct: 534 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 574
>BC033135-1|AAH33135.1| 559|Homo sapiens Similar to cleavage
stimulation factor, 3' pre-RNA, subunit 2, 64kD protein.
Length = 559
Score = 64.9 bits (151), Expect = 1e-10
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +1
Query: 277 DQEKAALIMQVLQLSDEQIALLPPEQRASVLRLKEQIAKST 399
D EKAALIMQVLQL+ +QIA+LPPEQR S+L LKEQI KST
Sbjct: 516 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 556
>BC017712-1|AAH17712.1| 577|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 64.9 bits (151), Expect = 1e-10
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +1
Query: 277 DQEKAALIMQVLQLSDEQIALLPPEQRASVLRLKEQIAKST 399
D EKAALIMQVLQL+ +QIA+LPPEQR S+L LKEQI KST
Sbjct: 534 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 574
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.315 0.130 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,392,019
Number of Sequences: 237096
Number of extensions: 873643
Number of successful extensions: 2075
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2075
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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