Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B13
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical pr...    39   0.001
U00046-2|AAN65304.1|  860|Caenorhabditis elegans Temporarily ass...    27   7.5  
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    27   7.5  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     27   7.5  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     27   7.5  
U56965-4|AAK84491.1|  118|Caenorhabditis elegans Hypothetical pr...    26   10.0 
U53148-7|AAB37074.4|  529|Caenorhabditis elegans Cytochrome p450...    26   10.0 

>Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical
           protein F56A8.6 protein.
          Length = 336

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 14/42 (33%), Positives = 29/42 (69%)
 Frame = +1

Query: 277 DQEKAALIMQVLQLSDEQIALLPPEQRASVLRLKEQIAKSTQ 402
           +Q+ A L+MQV+QLS+  + +LP   R  ++ L++Q+ ++ +
Sbjct: 295 EQQNAELLMQVMQLSEHDLQMLPAGDREKIIELRQQLKRNVK 336


>U00046-2|AAN65304.1|  860|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform c protein.
          Length = 860

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 316 IAALALSTQPFPDRKLPKEFPVWYEL 239
           + AL +  QPF    +P++F  W+ L
Sbjct: 618 LMALEIDRQPFRVENVPEDFETWFSL 643


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 316  IAALALSTQPFPDRKLPKEFPVWYEL 239
            + AL +  QPF    +P++F  W+ L
Sbjct: 2289 LMALEIDRQPFRVENVPEDFETWFSL 2314


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 316  IAALALSTQPFPDRKLPKEFPVWYEL 239
            + AL +  QPF    +P++F  W+ L
Sbjct: 2231 LMALEIDRQPFRVENVPEDFETWFSL 2256


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 316  IAALALSTQPFPDRKLPKEFPVWYEL 239
            + AL +  QPF    +P++F  W+ L
Sbjct: 2413 LMALEIDRQPFRVENVPEDFETWFSL 2438


>U56965-4|AAK84491.1|  118|Caenorhabditis elegans Hypothetical
           protein C15H9.11 protein.
          Length = 118

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +3

Query: 228 ECSSSSYHTG----NSFGSFRSGKGCVDNASAAIIGRTDSV 338
           +CS+++Y T     NS G+F+  K   DNA+    GR  SV
Sbjct: 35  DCSANNYCTTIIEFNSDGTFKDEKKGCDNANCQGTGRFSSV 75


>U53148-7|AAB37074.4|  529|Caenorhabditis elegans Cytochrome p450
           family protein 32A1 protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 367 GRWLVVPAVITLSVRPIIAALALSTQPFPDRKLPKEFPV 251
           G+ +V+PA +   V PI AA      P PD   P  F +
Sbjct: 409 GQKIVLPAGLAACVSPIAAARDPRAWPDPDTYNPDNFDI 447


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.130    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,191,063
Number of Sequences: 27780
Number of extensions: 134946
Number of successful extensions: 373
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)