Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B13
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   0.47 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.6 bits (51), Expect = 0.47
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 267 GSFRSGKGCVDNASAAIIGRTDSVITAGTTSQRPQAEGANRQEYSTA 407
           G  RSGK    NA+ A   ++ S++++  +++  +  G N    +TA
Sbjct: 367 GRGRSGKKSKFNAAVAAAVQSSSIVSSPDSARHQRIGGCNGLHTTTA 413


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 395 LLAICSFSLRTLARCSGGN 339
           LL+IC F L+ +A   G N
Sbjct: 8   LLSICLFGLQEIAIQPGSN 26


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 115 RDPRLSSGPSFNVDPRIRTND 177
           +D +L+S   +NV  ++RT +
Sbjct: 95  KDNKLASNAGYNVIEQVRTKE 115


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 115 RDPRLSSGPSFNVDPRIRTND 177
           +D +L+S   +NV  ++RT +
Sbjct: 95  KDNKLASNAGYNVIEQVRTKE 115


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 115 RDPRLSSGPSFNVDPRIRTND 177
           +D +L+S   +NV  ++RT +
Sbjct: 95  KDNKLASNAGYNVIEQVRTKE 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.130    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,632
Number of Sequences: 438
Number of extensions: 1881
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)