Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_B12
(430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 71 5e-13
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727... 30 0.91
04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706 30 0.91
12_02_0630 + 21367620-21367695,21367890-21367976,21368287-213683... 28 2.8
11_06_0025 - 19341127-19341339,19341426-19341620,19341912-193420... 28 2.8
11_06_0024 - 19331250-19331380,19331412-19331484,19331571-193317... 28 2.8
04_03_0964 - 21290107-21290667,21290780-21291130,21291230-212914... 28 2.8
10_01_0108 + 1337009-1338190 28 3.7
10_08_0131 - 15078894-15079617,15079898-15080016 27 6.4
04_04_0231 - 23790745-23791131,23791207-23792382 27 6.4
08_01_0291 - 2337777-2338343 27 8.5
05_06_0138 + 25946545-25946632,25946715-25947489,25947627-259479... 27 8.5
03_05_0240 - 22263189-22263815 27 8.5
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 70.5 bits (165), Expect = 5e-13
Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Frame = +1
Query: 58 MIIYKDVITGDEMFSDTYRVKLIDE-VIYEVTGKTVIRTQDDIHIDGFNPSAEEA--DEG 228
M++Y+D++TGDE+ SD++ + I+ +++EV GK V++ D+ I G NPSAE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59
Query: 229 TDSKVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYM 339
D + VDIV RL E F DKK + ++K Y+
Sbjct: 60 VDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYI 95
>05_03_0001 -
7269231-7269436,7269536-7270100,7270600-7270821,
7270913-7271155,7271227-7271481,7272017-7272370,
7273082-7273164,7273250-7273630,7273874-7274027
Length = 820
Score = 29.9 bits (64), Expect = 0.91
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 209 AEGLNPSMWISSCVLITVLPVTS*ITSSINLTLYVSENISSPVI 78
+EG+N S + CV++ LP S + T+ ENIS PV+
Sbjct: 662 SEGINFSDGMGRCVVMVGLPYPSPSDVELTETIKYIENISKPVL 705
>04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706
Length = 187
Score = 29.9 bits (64), Expect = 0.91
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 134 LFMKSPARP*SEHKTISTLMDLTPRPRRLTKGRIPRWRL 250
L + +PA P + H+ L+ +PR L R PRWRL
Sbjct: 6 LLLANPAAPTARHQ--HRLLQQRRQPRLLASSRPPRWRL 42
>12_02_0630 +
21367620-21367695,21367890-21367976,21368287-21368333,
21368413-21368470,21369056-21369166,21369353-21369478,
21370123-21370182,21370966-21371186,21371274-21371460,
21371939-21372063
Length = 365
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = +1
Query: 52 IKMIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVIRTQDDIHIDGFNPSAEEAD 222
+K+++ + T D++ D +++ +++ ++ +DD+HI G P A+ D
Sbjct: 14 LKLVMMESHATPDDLTGDKGAAQILHRQLFDAHEPNLL-DEDDMHIFGSKPMADPLD 69
>11_06_0025 -
19341127-19341339,19341426-19341620,19341912-19342088,
19342505-19342672,19343533-19343574,19344129-19344214,
19345218-19345545
Length = 402
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 49 SIKMIIYKDVITGDEMFSDTYRVKLIDE 132
+ K+I + + DEMFSD R KL+D+
Sbjct: 318 AFKIICSRKIDKSDEMFSDDVRSKLLDD 345
>11_06_0024 -
19331250-19331380,19331412-19331484,19331571-19331768,
19333317-19333484,19334187-19334263,19335321-19335423
Length = 249
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 49 SIKMIIYKDVITGDEMFSDTYRVKLIDE 132
+ K+I + + DEMFSD R KL+D+
Sbjct: 168 AFKIICSRKIDKSDEMFSDDVRSKLLDD 195
>04_03_0964 -
21290107-21290667,21290780-21291130,21291230-21291411,
21291505-21291631,21291956-21292168,21292627-21292755,
21292891-21293616
Length = 762
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 124 IDEVIYEVTGKTVIRTQDDIHIDGFNP 204
+ E ++EVTGK + DD + DG +P
Sbjct: 639 LSETVFEVTGKDKSMSDDDDNTDGADP 665
>10_01_0108 + 1337009-1338190
Length = 393
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 52 IKMIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVIRTQDDI 183
I + + + E ++D Y+ +L+D I E+ K V++ +I
Sbjct: 131 IGLTFIRSIHLSSEAYNDAYKFRLLDSCIDEIGEKNVVQVVSNI 174
>10_08_0131 - 15078894-15079617,15079898-15080016
Length = 280
Score = 27.1 bits (57), Expect = 6.4
Identities = 21/91 (23%), Positives = 41/91 (45%)
Frame = +1
Query: 10 SRSFGFIILNRLQSIKMIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVIRTQDDIHI 189
++++ + +N + K I +D + E +D Y + VI +V+ ++H+
Sbjct: 30 AQAYHVLKINGARGFKNFIRRDELERSEYLNDDY-FAIAAHVIIPKEKPSVVVPPSNMHL 88
Query: 190 DGFNPSAEEADEGTDSKVETGVDIVLNHRLV 282
+ + EGTD K G ++ HRLV
Sbjct: 89 HYGDLLVSK--EGTDVKFLVGGEMFAAHRLV 117
>04_04_0231 - 23790745-23791131,23791207-23792382
Length = 520
Score = 27.1 bits (57), Expect = 6.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 295 MHTFRLACDSGLCL 254
MH FR+AC +G CL
Sbjct: 317 MHVFRMACKNGCCL 330
>08_01_0291 - 2337777-2338343
Length = 188
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 171 CSDHGLAGDFINNFVDQLN 115
CS GLAGD++N +D N
Sbjct: 134 CSFDGLAGDYLNGLIDVEN 152
>05_06_0138 +
25946545-25946632,25946715-25947489,25947627-25947910,
25948100-25948238,25948323-25948394,25948477-25948548,
25948726-25948806,25948894-25949054,25949162-25949424,
25949661-25949787,25949974-25950042,25950154-25950346,
25950446-25950860
Length = 912
Score = 26.6 bits (56), Expect = 8.5
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +1
Query: 106 TYRVKLIDEVIYEVTGKTVIRTQDDIHIDGF----NPSAEEADEGTDSKVETGV 255
T + L+D + +G TVIR DD + + NP AE +D T KV+ +
Sbjct: 195 TQGLVLLDRRNFGASGSTVIRYPDDTYDRVWWPWSNPPAEWSDISTADKVQNTI 248
>03_05_0240 - 22263189-22263815
Length = 208
Score = 26.6 bits (56), Expect = 8.5
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 61 IIYKDVITGDEMFSDTYRVKLIDEVIY-EVTGKTVIRTQDDIHIDGFNPSAEEADEGTDS 237
+I KDV GDE+ D + V +E+I +V + ++D+ I E E
Sbjct: 77 LIEKDVEVGDEIHKDVFVVDWKEELIEGDVQVGDEKQVEEDVDIGEERHRDVEDGEVEQE 136
Query: 238 KVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYM 339
+ G+D+ N E D++ L+++D +
Sbjct: 137 MSDDGMDV--NQSDNENTVELDERRLILFIRDLL 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,366,556
Number of Sequences: 37544
Number of extensions: 201921
Number of successful extensions: 655
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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