Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B11
         (242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   0.46 
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   1.9  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    23   4.3  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    23   5.6  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    23   5.6  
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz...    23   5.6  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    23   5.6  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    23   7.5  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    22   9.9  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 0.46
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -3

Query: 228 LFFSRPVFRLPTFFGIF*SILIKFPSVVIL*FLISFFLRNCVF 100
           LFF    F     F +    ++ F S  IL FL  FFL  CVF
Sbjct: 124 LFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVF 166



 Score = 23.0 bits (47), Expect = 5.6
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
 Frame = -1

Query: 200 FPRFLVSFDQY*LS-FRLLSSYDSLLVF------SYEIVFFINTIFI 81
           FP FL  F    LS FR L  +   L+F      S+  +FF++ IFI
Sbjct: 98  FPNFLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFI 144


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 149  TDGNLISIDQKIPKNVGSLK 208
            TD  L+S+ +K+P+NV  LK
Sbjct: 1145 TDSVLLSMAKKLPRNVKELK 1164


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 128 LVFSYEIVFFINTIFIRPYRLNGQLKL 48
           LVF    +  +   F+RP RL+ Q +L
Sbjct: 450 LVFPITSILGVEQFFLRPRRLSNQKRL 476


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 122 KLIRNHKMTTDGNLISIDQKIPKNVGSLKTGREKNN 229
           KL+R H    DG  I+++ +  K   +  TG   +N
Sbjct: 77  KLVRMHIFQFDGQYITLNSEFRKQFITALTGGGNHN 112


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 107 QFRKKKLIRNHKMTTD 154
           Q RK+K++RNH  T D
Sbjct: 54  QTRKRKVVRNHLDTGD 69


>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
           E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 161 SFRLLSSYDSLLVFSYEIVFFINTIFIRPYRLNGQLKLN 45
           +F+L+ S+D        +V F++T+F      NG+L L+
Sbjct: 52  TFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLD 90


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 134  NHKMTTDGNLISIDQKIPKNVGSLKTGRE 220
            N  ++ DG L S+  K P+ V +++ G+E
Sbjct: 1103 NQDISGDGKLHSLRMKEPEVVQTIRPGQE 1131


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 213 PVFRLPTFFGIF*SILIKFPSV 148
           P+ R P F G + +I+ K PSV
Sbjct: 166 PIARRPLFPGFYKAIVTKNPSV 187


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 164 LSFRLLSSYDSLLVFSYEIVFFINTIFIRPYRLNGQLKLNNFV 36
           LSFRL   + S L+FS  I  + N + +R  +L  +L L + V
Sbjct: 750 LSFRLECVFISFLIFSVPIYDWGNYLNLRG-KLLSELNLESGV 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 945,539
Number of Sequences: 5004
Number of extensions: 15867
Number of successful extensions: 35
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)