Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B11
         (242 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0793 - 7685702-7686955                                           26   3.7  
04_03_0187 + 12436934-12437108,12438020-12439044                       26   3.7  
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65...    26   3.7  

>08_01_0793 - 7685702-7686955
          Length = 417

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 175 SKDTKKRGKPENWT*EEQLR 234
           S++T +RG   NWT EE LR
Sbjct: 142 SQETGRRGTRVNWTEEENLR 161


>04_03_0187 + 12436934-12437108,12438020-12439044
          Length = 399

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 175 SKDTKKRGKPENWT*EEQLR 234
           S++T +RG   NWT EE LR
Sbjct: 124 SQETGRRGTHVNWTEEENLR 143


>03_01_0082 +
           653041-653137,653219-653496,653596-653689,653804-653886,
           654027-654247,654395-654533,654628-654710,654824-655036,
           655099-655494,655587-655758,656085-656276,656363-656569,
           656661-656753,656957-657156,657329-657838,658114-658184,
           658322-658963,659057-659207,659425-659665
          Length = 1360

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 185 PKNVGSLKTGREKNN*EEG 241
           PK    LKTG  KNN EEG
Sbjct: 940 PKLTNRLKTGNVKNNNEEG 958


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,259,339
Number of Sequences: 37544
Number of extensions: 77896
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)