Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B11
         (242 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-3|CAB54348.1|  380|Caenorhabditis elegans Hypothetical ...    28   0.77 
AC025723-2|AAK29943.1|  581|Caenorhabditis elegans Hypothetical ...    25   5.4  
AC024847-8|AAF60857.1|  377|Caenorhabditis elegans Hypothetical ...    25   5.4  
Z81015-6|CAE17725.1|  209|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical p...    25   9.4  
AF125448-5|AAD12810.1|  188|Caenorhabditis elegans Hypothetical ...    25   9.4  

>AL110478-3|CAB54348.1|  380|Caenorhabditis elegans Hypothetical
           protein Y26D4A.8 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 116 KKKLIRNHKMTTDGNLISIDQKIPKNVGSL 205
           K+ +  NH +T   N+IS  Q++PK V +L
Sbjct: 162 KQDITENHFITAASNMISAGQELPKVVDTL 191


>AC025723-2|AAK29943.1|  581|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.8 protein.
          Length = 581

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 215 VQFSGFPRFLVSFDQY*LSFRLLSSYDSLLVFSYEIVF 102
           V FSG+P  L+S D Y ++   L+S ++ +    + ++
Sbjct: 276 VTFSGYPGVLISTDDYTITSAGLTSIETTIAIFNQTLY 313


>AC024847-8|AAF60857.1|  377|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.1 protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -1

Query: 140 YDSLLVFSYEIVFFINTIFIRPYRLNGQLKLNNFVD*HNCYKFS 9
           +DS   F++ +  F N I + P + +G++ L+ F    +C+ FS
Sbjct: 276 FDSTDDFTFVVQPFFNGITVPPLKPDGEVNLDWFAP--DCFHFS 317


>Z81015-6|CAE17725.1|  209|Caenorhabditis elegans Hypothetical
           protein C11E4.8 protein.
          Length = 209

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 205 QASHVFWYLLINTN*VSVCCHLMIPY*FFLTKLCFLLI 92
           Q    F    I    + VCC + +   FFLT L F ++
Sbjct: 91  QGIRTFRLAYIEVYMIGVCCRIFMFLSFFLTLLFFFIV 128


>Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical
           protein H12I19.1 protein.
          Length = 327

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -1

Query: 242 LPLLSCSSHVQFSGFPR-FLVSFDQY*LSFRLLS-SYDSLLVFSYEIVFFINTIFI 81
           L ++    H  F+ F   F +    Y +S+ + S +Y   L FSY  V+F   IFI
Sbjct: 145 LQIIQTFIHRHFNSFYAIFAIKDALYIISWLVSSGNYQFWLEFSYMTVYFATLIFI 200


>Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 148 CHLMIPY*FFLTKLCFLLIQYLSVLIVSTD 59
           C  ++P+  F T + F+L +    L++S D
Sbjct: 186 CFFVVPFCLFFTLILFILPETPKFLLISKD 215


>Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 148 CHLMIPY*FFLTKLCFLLIQYLSVLIVSTD 59
           C  ++P+  F T + F+L +    L++S D
Sbjct: 186 CFFVVPFCLFFTLILFILPETPKFLLISKD 215


>AF125448-5|AAD12810.1|  188|Caenorhabditis elegans Hypothetical
           protein H14E04.3 protein.
          Length = 188

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -1

Query: 164 LSFRLLSSYD---SLLVFSYEIVFFINTIF 84
           +S  L ++YD   SL+  S+ I  FINTIF
Sbjct: 63  ISIALHNAYDTRISLISISWTIWMFINTIF 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,129,429
Number of Sequences: 27780
Number of extensions: 86820
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)