Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B08
         (248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    29   0.090
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    23   4.5  
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    23   4.5  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    23   7.8  

>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 29.1 bits (62), Expect = 0.090
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 1   ARGPYSNIVRKSANFSSIEIRNKNICPSPLLRMSVV 108
           A G  S I  +S N  ++EI ++N C  P+L++  V
Sbjct: 52  APGTISPIAVRSRNVRAVEIADENACEEPVLKIKSV 87


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 99  ERSILKTGHVIWIRSLMCRLL 161
           +R IL  GH   ++ +MC LL
Sbjct: 64  DRFILSNGHACVLQYIMCHLL 84


>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = -3

Query: 213 NDVRHIGTQGDVII*QTLTADTLGNVSKLRDPSSKYYAHSQERGGAYVFVTYFNRGKIRT 34
           N V H+    + +    +  + L      RD S  +YAHS      +   T FN G  R 
Sbjct: 91  NGVSHVLQDKETLRIGNVQIEALHTPCHTRD-SICFYAHSSNEHAVFTGDTLFNAGCGRF 149

Query: 33  F 31
           F
Sbjct: 150 F 150


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -3

Query: 165 TLTADTLGNVSKLRDPSSKYYAHSQERGGAYVFVTYFNRGKIRTFSNYI 19
           +L  D LG     R     YY  S   G A   + YF+   + + S YI
Sbjct: 239 SLIKDNLGGNIGYRKSQDTYYYGSTSFGSAKKVINYFDNYHLLS-SKYI 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,086,711
Number of Sequences: 5004
Number of extensions: 19156
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)