Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B08
         (248 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718...    29   0.52 
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246...    25   8.5  
04_03_0936 + 20921918-20922409,20922807-20923199                       25   8.5  

>03_02_0295 +
           7178921-7179451,7180083-7180448,7181316-7181450,
           7181533-7181606,7181960-7181999,7182178-7182223,
           7182398-7182477,7182585-7182760,7182848-7182973,
           7183338-7183430,7184135-7184260,7184815-7184884,
           7185262-7185344,7186216-7186329,7186884-7186983,
           7187557-7187583
          Length = 728

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 232 RNPLFVKRCPPYWN 191
           RNP+ ++RCP YW+
Sbjct: 60  RNPILIRRCPIYWD 73


>04_04_0451 - 25323178-25323241,25323614-25323741,25324533-25324634,
            25325314-25325382,25325489-25325557,25325646-25325720,
            25325805-25325909,25326394-25326492,25326626-25328344,
            25328629-25328931,25329031-25329129,25329733-25329850,
            25329933-25330018,25330091-25330159,25330232-25330306,
            25330675-25330772,25331271-25331432,25332391-25332556,
            25332902-25332970,25333064-25333126,25333221-25333376,
            25334027-25334365
          Length = 1410

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 71   FLLRISIEEKFALFRTIFEYGPR 3
            F+L +S+EE+  L R + +Y PR
Sbjct: 959  FILNLSVEEQNLLRRALKQYTPR 981


>04_03_0936 + 20921918-20922409,20922807-20923199
          Length = 294

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -1

Query: 134 PNYVTRLQNTTLIRRSGEGHMFLLRISIEEKFALFRTIFEY 12
           P +++RL     ++   EGH+   +++   +  +F+TI  Y
Sbjct: 36  PRHISRLSGKERLQEILEGHVMDCKVAFRMEPHVFKTIANY 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,858,579
Number of Sequences: 37544
Number of extensions: 120907
Number of successful extensions: 207
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)