Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B07
         (208 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   1.0  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    24   3.2  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   4.2  
SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom...    23   5.5  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    23   7.3  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    22   9.6  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = -1

Query: 109  NNYNKMNDRSTDNIHLYYI 53
            N+Y +++DR+ +N+ LY+I
Sbjct: 983  NHYAEIDDRNPENVSLYHI 1001


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -1

Query: 118 IMSNNYNKMNDRSTDNIHLYYIFYLFLCKNKMNEKSI 8
           I  +++ ++  R+  N+   +++ + LC    N KSI
Sbjct: 24  IFMDDFEELKVRNAWNVTNGHVYCIHLCSRSANSKSI 60


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 70  IHLYYIFYLFLC 35
           I++Y+ FY FLC
Sbjct: 81  IYIYFFFYSFLC 92


>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 161

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 103 YNKMNDRSTDNIHLYYIFYLF 41
           Y +  D+   + HLY  +YLF
Sbjct: 122 YARYGDKKVKSAHLYSRYYLF 142


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 125 FKSHCDNICLIFFHLII 175
           F +HC N+CL    LI+
Sbjct: 103 FGAHCQNMCLYGDELIV 119


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 114 MITCSNPIVITXXXXXXXXXXTLINKLIL 200
           ++ CSNP+V+             I +LIL
Sbjct: 528 LLFCSNPVVLDSMRHVLHTANVQIKRLIL 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,191
Number of Sequences: 5004
Number of extensions: 8813
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)