Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B07
         (208 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1096 + 30855192-30855225,30856135-30856208,30856293-308564...    25   6.3  
03_01_0401 - 3108477-3108689,3108787-3108933,3109022-3109234,310...    25   6.3  
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718     25   8.4  

>04_04_1096 +
           30855192-30855225,30856135-30856208,30856293-30856467,
           30856842-30856918,30857042-30857279,30857414-30857478,
           30857628-30858086,30858253-30858465,30858613-30859002
          Length = 574

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -1

Query: 124 HVIMSNNYNK--MNDRSTDNIHL-YYIFYLFLCKNKMNEKSIL 5
           H+I+ NN NK   N R T  + L + +  L + KN   E +IL
Sbjct: 426 HIILENNENKPVTNSRDTQEVRLDHGLQMLTIFKNHEVETTIL 468


>03_01_0401 -
           3108477-3108689,3108787-3108933,3109022-3109234,
           3109321-3109938,3110045-3110584,3110941-3111041,
           3111208-3111325,3111450-3111535,3111888-3112002
          Length = 716

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 127 EHVIMSNNYNK--MNDRSTDNIHL-YYIFYLFLCKNKMNEKSIL 5
           +H+I+ NN NK   N R T  ++L   I  L + K  +++ SIL
Sbjct: 577 KHIILENNENKPVTNSRDTQEVNLDQGIQMLKIFKEHVSKTSIL 620


>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
          Length = 490

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 49  YLFLCKNKMNEKSILV 2
           Y FLCKN+  EKS ++
Sbjct: 453 YQFLCKNEKGEKSTVI 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,469,267
Number of Sequences: 37544
Number of extensions: 38898
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)