Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B06
         (247 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5HNF4 Cluster: ADP-ribosyl cyclase beta; n=2; Strongyl...    31   4.9  
UniRef50_A5E2I9 Cluster: Pseudouridylate synthase; n=4; Saccharo...    31   6.5  

>UniRef50_A5HNF4 Cluster: ADP-ribosyl cyclase beta; n=2;
           Strongylocentrotus purpuratus|Rep: ADP-ribosyl cyclase
           beta - Strongylocentrotus purpuratus (Purple sea urchin)
          Length = 324

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 1   ARGSGGDDNNDSNYS-VEEPELVPDILAVFALYLKPTFQ 114
           A+ +GG  NN S ++ +E P L  D++   A+YL P FQ
Sbjct: 195 AQRAGGAFNNGSIFATIEAPNLNQDVVTNVAIYLIPDFQ 233


>UniRef50_A5E2I9 Cluster: Pseudouridylate synthase; n=4;
           Saccharomycetales|Rep: Pseudouridylate synthase -
           Lodderomyces elongisporus (Yeast) (Saccharomyces
           elongisporus)
          Length = 491

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 46  VEEPELVPDILAVFALYLKPTFQSINDLPAAL 141
           +E PE+V D++ V     KP ++  ND+P  L
Sbjct: 348 LESPEIVKDLMDVTKFPTKPMYEMANDIPLVL 379


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,491,791
Number of Sequences: 1657284
Number of extensions: 3415130
Number of successful extensions: 8636
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8633
length of database: 575,637,011
effective HSP length: 60
effective length of database: 476,199,971
effective search space used: 10000199391
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)