Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_B06
(247 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 26 0.80
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 25 1.1
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 25 1.8
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo... 25 1.8
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 24 3.2
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 24 3.2
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 24 3.2
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 23 4.3
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 23 5.6
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 23 5.6
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 23 5.6
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 23 7.4
SPCC1494.02c |taf13||transcription factor TFIID complex subunit ... 23 7.4
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 23 7.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 22 9.8
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 22 9.8
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 22 9.8
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 0.80
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 34 SNYSVEEPELVPDILAVFALYLKPTFQSINDLPAALLRDVTAPR 165
SN S P+ P + F++ ++IND P ++L + PR
Sbjct: 338 SNASNIAPDSAPPASSQFSVPFNAAAENINDTPDSVLANSPTPR 381
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 1.1
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 10 SGGDDNNDSNYSVEEPELVPDILAV 84
+GG N++ NYS + P ++P+ L++
Sbjct: 9 NGGQINDNINYSEKRPTMLPENLSL 33
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 24.6 bits (51), Expect = 1.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 22 DNNDSNYSVEEPELVPDILAVFALYLKPTFQSINDLPAALLRDVTA 159
DN+D + V+ E DI +PT++++N L A ++ +TA
Sbjct: 200 DNSDCTFMVDN-EACYDICRRNLDIERPTYENLNRLIAQVVSSITA 244
>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 55 PELVPDILAVFALYLKPTFQSINDL 129
P + L + +++KPTFQS+ D+
Sbjct: 505 PSVFIAYLLISPIFVKPTFQSLKDV 529
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 23.8 bits (49), Expect = 3.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 239 FMQCHLLIVINECCE 195
F Q LL+++N CCE
Sbjct: 67 FYQSPLLLILNYCCE 81
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 23.8 bits (49), Expect = 3.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 28 NDSNYSVEEPELVPDILAVFALYLKPTFQS 117
+D ++SVEE V ++L F KP F S
Sbjct: 606 DDFSFSVEEKSSVNNLLTQFDEVAKPDFVS 635
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 23.8 bits (49), Expect = 3.2
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +1
Query: 10 SGGDDNNDSNYSVEEPELV 66
+GG D + ++YS++EP L+
Sbjct: 310 TGGSDGSVNHYSLDEPPLL 328
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 23.4 bits (48), Expect = 4.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 49 EEPELVPDILAVFALYLKPTFQSINDLPA 135
E+ +L I+ LY+K F ++NDL A
Sbjct: 148 EDLQLKNHIVGYQKLYIKLVFDNLNDLQA 176
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 23.0 bits (47), Expect = 5.6
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +1
Query: 19 DDNNDSNYSVEE 54
DDN +SN+S+EE
Sbjct: 1172 DDNTNSNFSLEE 1183
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 23.0 bits (47), Expect = 5.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 94 YLKPTFQSINDLPAALLRDV 153
Y + T + DL AALLRDV
Sbjct: 371 YAEATSVVLRDLEAALLRDV 390
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 134 RRCSATSLHRALEQCSPQFVTRNTHLL 214
+ C ++S + C P T+NT LL
Sbjct: 442 QECKSSSSPELINLCDPSLRTKNTILL 468
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 22.6 bits (46), Expect = 7.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 13 GGDDNNDSNYSVEEPELVPDILAV 84
GG DN EEP+L +LAV
Sbjct: 32 GGKDNESVIPEKEEPDLNEPVLAV 55
>SPCC1494.02c |taf13||transcription factor TFIID complex subunit
Taf13|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 175 MFSAVRDSQHSFITINK 225
+F + HSFIT+NK
Sbjct: 112 IFLRINTKMHSFITLNK 128
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 22.6 bits (46), Expect = 7.4
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 146 ATSLHRALEQCSPQFVTRNTHLLQSIND 229
A SLHRAL+ C + + H S +
Sbjct: 134 AVSLHRALDYCKSKHGSNMIHFEASAKE 161
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = -2
Query: 225 FIDCNK*VLRVTNCGEHCSSARCSDVAEQR 136
+ CN +CG H S C ++E R
Sbjct: 407 YYSCNNPCTLFFDCGLHKCSKTCHPISETR 436
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 94 RARTRPIYRELAQVLQQNNSNRCCRLH 14
R RT+ +R LA L++ S++ +LH
Sbjct: 511 RRRTKRAFRRLAASLKKRPSDKDNKLH 537
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 13 GGDDNNDSNYSVEEPE 60
GGDD ++ +YS E+ E
Sbjct: 123 GGDDYDNEDYSEEDDE 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 914,598
Number of Sequences: 5004
Number of extensions: 14306
Number of successful extensions: 37
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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