Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B06
         (247 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0021 - 133549-133628,133780-133824,133850-133858,134513-13...    27   2.1  
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126...    26   4.9  
11_04_0046 + 12751830-12752285,12752385-12752670,12753329-12753786     25   6.4  
03_03_0276 - 16113073-16113279,16114766-16114873                       25   6.4  
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012...    25   8.5  
02_04_0311 + 21936812-21937861                                         25   8.5  

>07_01_0021 -
           133549-133628,133780-133824,133850-133858,134513-134656,
           140098-140391,141324-141908,142034-142198,142364-142406
          Length = 454

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 230 CHLLIVINECCESRTAENIV 171
           CH +  +NECC SRT +N +
Sbjct: 189 CHKIDPVNECC-SRTCQNAI 207


>01_07_0238 +
           42209407-42209964,42210039-42210561,42212577-42212665,
           42212981-42213191,42213265-42213446,42213573-42213812,
           42214691-42214878,42215230-42215323,42215407-42215463,
           42215552-42215686,42216460-42216525,42216745-42216858,
           42217849-42218010,42218093-42218221,42218323-42218424,
           42219428-42219504,42219600-42219957
          Length = 1094

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 28  NDSNYSVEEPELVPDILAV 84
           ND+N+ +E P L+P +L +
Sbjct: 845 NDANFCLEVPNLIPSVLVL 863


>11_04_0046 + 12751830-12752285,12752385-12752670,12753329-12753786
          Length = 399

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 126 IIYRLKCRLQVEREHGQY 73
           I+Y   CRL VE EH  Y
Sbjct: 153 IVYEKSCRLPVELEHKAY 170


>03_03_0276 - 16113073-16113279,16114766-16114873
          Length = 104

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 10  SGGDDNNDSNYSVEEP--ELVPDILAVFALYLK-PT 108
           +G DD N+ +   EE   E+  D+L  F LYL+ PT
Sbjct: 69  NGSDDGNNDDEDEEESDDEMEVDLLIQFFLYLRNPT 104


>07_03_1762 -
           29299328-29299437,29299782-29299871,29300487-29301291,
           29301956-29303278
          Length = 775

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 7   GSGGDDNNDSNYSVEEPEL 63
           GSG + ++DS+Y + E EL
Sbjct: 307 GSGSESSSDSDYVISEQEL 325


>02_04_0311 + 21936812-21937861
          Length = 349

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 242 FFMQCHLLIVINECCESRTAENIVQVRGAVTSRSSAAGR 126
           FF+   + +++N+CC+  ++       GA   +SSAA R
Sbjct: 56  FFVLVFVCVIVNQCCDCDSSAG----AGAGQGQSSAARR 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,239,400
Number of Sequences: 37544
Number of extensions: 97427
Number of successful extensions: 262
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)