Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B06
         (247 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68010-1|CAD44146.1|   92|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z82264-2|CAB05160.1|  220|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z81132-4|CAB03440.1|  339|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z37983-5|CAA86059.2|  405|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    25   7.1  
AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical...    25   9.4  

>Z68010-1|CAD44146.1|   92|Caenorhabditis elegans Hypothetical
           protein T01C1.4 protein.
          Length = 92

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 112 EM*ASGRARTRPIYRELAQVLQQNNSNRC 26
           +M A+ R + RP+   +A V +Q N N+C
Sbjct: 41  DMPATIRTQDRPVVLYMAPVHKQENENKC 69


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
          protein C10C6.1 protein.
          Length = 1565

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 4  RGSGGDDNNDSNYSVE 51
          +G GG+D++DSN +VE
Sbjct: 12 QGGGGNDSSDSNSNVE 27


>Z82264-2|CAB05160.1|  220|Caenorhabditis elegans Hypothetical
           protein C49C3.6 protein.
          Length = 220

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 126 STRGAAPRRHCTAHLNN 176
           STRG+ PR  C+   NN
Sbjct: 184 STRGSLPRNQCSTRSNN 200


>Z81132-4|CAB03440.1|  339|Caenorhabditis elegans Hypothetical
           protein T26E4.5 protein.
          Length = 339

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 19  DDNNDSNYSVEEPELVPDILAVFALYLKPTFQSINDLPAALLRDVTAP 162
           D NN  N       L P ++  F L + P+F+  + L   ++R++ AP
Sbjct: 98  DSNNIRNLQKRIQPLFPKLVEQFHLKIIPSFKYFHQL-RPVIRELLAP 144


>Z37983-5|CAA86059.2|  405|Caenorhabditis elegans Hypothetical
           protein B0393.6 protein.
          Length = 405

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 146 ATSLHRALEQCSPQFVTRNTHLLQSI 223
           A S+ R  E C  QF+TR  + L+ I
Sbjct: 99  ARSMLRQCETCERQFITRTEYKLECI 124


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
          protein.
          Length = 1565

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 4  RGSGGDDNNDSNYSVE 51
          +G GG+D++DSN +VE
Sbjct: 12 QGGGGNDSSDSNSNVE 27


>AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical
           protein Y53F4B.21 protein.
          Length = 1099

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 10  SGGDDNNDSNYSVEEPELVPDIL 78
           SGGD +N+ N++ E  E + D+L
Sbjct: 239 SGGDMDNNLNFANEMKEAIGDLL 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,300,969
Number of Sequences: 27780
Number of extensions: 84736
Number of successful extensions: 234
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)