Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B06
         (247 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   0.32 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   3.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   3.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   5.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   6.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   6.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   6.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    19   6.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       19   9.1  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 0.32
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 131 PRRCSATSLHRALEQCSPQF--VTRNTHL-LQSINDI 232
           P +CS TS+H +  Q   Q     R+THL +  IN +
Sbjct: 362 PSKCSQTSVHYSNGQTHSQLCPTPRSTHLKVSGINRV 398


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 34  SNYSVEEPELVPDILAVFALYLKPTF 111
           S Y   EP+ + ++L    L   P+F
Sbjct: 327 SPYHTPEPDCIHELLGHMPLLADPSF 352


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 173 QCSPQFVTRNTHLLQ 217
           Q SPQ+ + ++H+LQ
Sbjct: 437 QPSPQYPSTSSHILQ 451


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 5.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 7   GSGGDDNNDSNYSVEEPE 60
           G G DD +D   + EE +
Sbjct: 274 GEGADDRDDDEENEEEED 291


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 117 RLKCRLQVEREHGQYI 70
           RL C +Q  R  G Y+
Sbjct: 209 RLACEIQFVRSMGYYL 224


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 117 RLKCRLQVEREHGQYI 70
           RL C +Q  R  G Y+
Sbjct: 209 RLACEIQFVRSMGYYL 224


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 76  LAVFALYLKPTFQSIND 126
           L  FAL LK    SIN+
Sbjct: 870 LVEFALELKKALSSINE 886


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 117 RLKCRLQVEREHGQYI 70
           RL C +Q  R  G Y+
Sbjct: 148 RLACEIQFVRSMGYYL 163


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 4   RGSGGDDNND 33
           +   GDDNND
Sbjct: 106 KNKDGDDNND 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,678
Number of Sequences: 438
Number of extensions: 828
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)