Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_B05
(186 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 27 0.25
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 25 1.7
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 24 3.0
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces... 24 3.0
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 24 3.0
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 23 5.3
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 23 7.0
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 23 7.0
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 22 9.3
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 22 9.3
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 22 9.3
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 27.5 bits (58), Expect = 0.25
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 86 IGHV-HSKSLLNLSCKQIKDFVNGHNYRRQLLAK 184
I H+ H KS L+ ++ +N HN+R Q L K
Sbjct: 64 IAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDK 97
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 24.6 bits (51), Expect = 1.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 44 MAVRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNG 154
MAV ++ +V+ ++ K LL+ CK + + + G
Sbjct: 91 MAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRG 127
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 23.8 bits (49), Expect = 3.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 68 LAMVVCIGHVHSKSLLNLSCKQIKDFVNGHN 160
L+++V I H +S L K IKDF N H+
Sbjct: 872 LSILVLIVRQHIRSFLPDLFKLIKDFWNPHS 902
>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 348
Score = 23.8 bits (49), Expect = 3.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 141 ISSTDTIIGDNYW 179
I+ DT GDNYW
Sbjct: 229 ITQCDTATGDNYW 241
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 23.8 bits (49), Expect = 3.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 156 CPLTKSLICLHDKFSRDLLWT 94
CP ++ L +F RD LW+
Sbjct: 1352 CPGSRQFTVLQSRFQRDHLWS 1372
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 23.0 bits (47), Expect = 5.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -3
Query: 106 LTMDVSNTYDHCQNKKRAYGHCSVV 32
L D + C N R YGH S++
Sbjct: 316 LETDSPDMITECLNAVRKYGHVSII 340
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 22.6 bits (46), Expect = 7.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +3
Query: 15 YRSW*HTTEQWPYARFLFWQWSY 83
Y W H+ + PY + WQ +Y
Sbjct: 141 YCIWSHSKKMLPYQALVNWQNAY 163
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 22.6 bits (46), Expect = 7.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -1
Query: 132 CLHDKFSRDLLWTCPIHTTIAK 67
C + DL++TC I T+ K
Sbjct: 358 CFAENVQGDLIFTCEISLTVLK 379
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 22.2 bits (45), Expect = 9.3
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 64 YFGNGRMYWTRP 99
YFG G YW P
Sbjct: 712 YFGTGENYWRGP 723
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 22.2 bits (45), Expect = 9.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 134 IKDFVNGHNYRRQLL 178
I+++VNGH Y + L
Sbjct: 679 IREYVNGHGYSQHAL 693
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 22.2 bits (45), Expect = 9.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 82 YDHCQNKKRAYGHCSVV 32
Y H QN ++ +G CS V
Sbjct: 1248 YAHSQNAEKIFGICSKV 1264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 783,788
Number of Sequences: 5004
Number of extensions: 11958
Number of successful extensions: 35
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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