Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B04
         (276 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   0.53 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   3.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   4.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   6.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    19   8.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   8.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   8.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 0.53
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -1

Query: 246 VDLKNNNGVGHFVSHLVEFGPDHLAGSAPSRH 151
           +D  +++G+ H         PDH    +PS H
Sbjct: 23  LDNNDSSGIPHSAESSASNSPDHYERFSPSTH 54


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 10/29 (34%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
 Frame = -2

Query: 158 VAMKSITTSL---SPASDSLVFKSSKSLM 81
           +A+  +T +L   SP+S++L + +++SLM
Sbjct: 255 MALSPVTHNLYYNSPSSENLYYVNTESLM 283


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 70  MSIHIKDFDDLKTRLSEAGDKLVVID 147
           M  +++   DL TR+S A D   V+D
Sbjct: 319 MQKYVQMIHDLHTRISTAIDLGYVVD 344


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 70  MSIHIKDFDDLKTRLSEAGDKLVVID 147
           M  +++   DL TR+S A D   V+D
Sbjct: 319 MQKYVQMIHDLHTRISTAIDLGYVVD 344


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 67  KMSIHIKDFDDLKTRLS 117
           K  +   ++DD+KT LS
Sbjct: 293 KKEVEDMEYDDIKTELS 309


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 49  NNKIDRVEHAAIICL 5
           NN IDR+E  A + L
Sbjct: 368 NNSIDRIESNAFLPL 382


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +1

Query: 64  YKMSIHIKDFDDLKTRLSEAGDKLVV 141
           ++++ +  D+D   T+L+ AG+   V
Sbjct: 227 HRLTSNTFDYDPRYTKLTVAGESFTV 252


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 20  RVFYPVDFIVF 52
           R+ +PV FI+F
Sbjct: 449 RIVFPVAFIIF 459


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 264 VLAFVNVDLKNNNGVGHFVSHL 199
           VLA V   LKN + +  F+S L
Sbjct: 390 VLALVRPFLKNPDAIPAFLSSL 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,531
Number of Sequences: 438
Number of extensions: 1581
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5388717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)