Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_B03
(279 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 38 3e-04
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 38 3e-04
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 37 6e-04
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 33 0.007
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 32 0.017
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 31 0.040
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 26 0.86
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 25 2.6
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 24 3.5
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 24 4.6
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 24 4.6
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 23 8.0
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 23 8.0
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch... 23 8.0
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 23 8.0
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 37.9 bits (84), Expect = 3e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +1
Query: 76 NAHGDTPLHIAARQGHFGCVVILLARGAKTDVENSAGEVPADVCTGQ 216
+A G TPLH A+ H V LL+ GAK DV ++G+ P D+ + +
Sbjct: 892 DALGYTPLHYASLYDHKDICVNLLSNGAKPDVIGASGKKPIDLSSSE 938
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 37.5 bits (83), Expect = 3e-04
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 82 HGDTPLHIAARQGHFGCVVILLARGAKTDVENSAGEVPADVC 207
+G TP+H A GH + IL+ RG ++ + GE P VC
Sbjct: 36 NGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDGETPLFVC 77
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 36.7 bits (81), Expect = 6e-04
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 82 HGDTPLHIAARQGHFGCVVILLARGAKTDVENSAGEVPAD 201
HGDT L I AR G C +LL+ A + + N+ G+ P D
Sbjct: 357 HGDTALLICARNGAKKCARLLLSFYASSSIPNNQGQYPTD 396
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 33.1 bits (72), Expect = 0.007
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 82 HGDTPLHIAARQGHFGCVVILLARGAKTDVENSAG 186
+GDT L+IAAR G+ V +L+ GA + N AG
Sbjct: 483 NGDTALNIAARIGNKNIVEVLMQAGASAYIPNRAG 517
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 31.9 bits (69), Expect = 0.017
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 76 NAHGDTPLHIAARQGHFGCVVILLARGAKTDVENSAGEVPADVC 207
+++G TPLH A +GH V L+ GA T ++S +VC
Sbjct: 171 DSYGFTPLHFALAEGHPDVGVELVRAGADTLRKDSENHTALEVC 214
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 30.7 bits (66), Expect = 0.040
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 76 NAHGDTPLHIAARQGHFGCVVILLARGAKTDVEN 177
+++GDT L IAAR G CV LL+ A + N
Sbjct: 366 DSNGDTSLLIAARNGAMDCVNSLLSYNANPSIPN 399
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 26.2 bits (55), Expect = 0.86
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 76 NAHGDTPLHIAARQGHFGCVVILLARGAKTDVEN 177
N G+T +H AA GH +LL G ++N
Sbjct: 68 NESGNTAMHWAALNGHAEICKLLLEAGGDPHIKN 101
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.6 bits (51), Expect = 2.6
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -2
Query: 236 SETALWHCPVHTSAGTSPAEFSTSVLAPRASRITTHPKCP*RAAMCSGVSP 84
S T L S+ + P+ S +L PR + TH CP R+A C G P
Sbjct: 74 STTDLDSSSASNSSCSIPSSISEKLL-PR-DNVKTH--CPKRSASCCGKKP 120
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 24.2 bits (50), Expect = 3.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 151 RGAKTDVENSAGEVPA 198
RGAK DVEN+ E+ A
Sbjct: 932 RGAKADVENAIKEISA 947
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 23.8 bits (49), Expect = 4.6
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Frame = -1
Query: 261 NGHRHLHVERDSTMALSRAH------VSGDFPGRVLHVGLSSP 151
NGH ++RD T +L +H +S D RV+ VG P
Sbjct: 45 NGHGLYSLDRDETESLMSSHEASNAGISLDSSFRVIQVGQPEP 87
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 23.8 bits (49), Expect = 4.6
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -2
Query: 110 AAMCSGVSPCALRACR----SSGSCWSNSGRQAEAPASPR 3
A + + P LRA R S+ W +G + AP++PR
Sbjct: 173 ATSTASLPPAGLRAGRGSQISASLAWLKTGGASAAPSNPR 212
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 23.0 bits (47), Expect = 8.0
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Frame = -2
Query: 182 AEFSTSVL---APRASRITTHP 126
A FST L APR R+ THP
Sbjct: 311 AAFSTFTLGSKAPRIDRVRTHP 332
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 23.0 bits (47), Expect = 8.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 85 GDTPLHIAARQGHFGCVVILLARGAKTDVENSAGEVPAD 201
G T LH+A + V LL GA + G++P D
Sbjct: 189 GQTYLHVATKAKDAELVKWLLDNGADPYRRDKFGKLPTD 227
>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 469
Score = 23.0 bits (47), Expect = 8.0
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 85 GDTPLHIAARQGHFGCVVILLARGAKTDVENSAGEVPADV 204
G TP+ I +G+ V + +TD E+ +PA +
Sbjct: 291 GLTPVEILGHKGNVENVRFQITDSIRTDAESKFTTIPAQL 330
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 23.0 bits (47), Expect = 8.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 76 NAHGDTPLHIAARQGHFGCVVILLARGAKTDV 171
N +G+T L++ G F C V L G DV
Sbjct: 243 NYYGETNLYLLGITGQFDCRVDLDREGPIHDV 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,013,423
Number of Sequences: 5004
Number of extensions: 17762
Number of successful extensions: 61
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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