Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B02
         (216 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O76899 Cluster: CG14779-PA, isoform A; n=4; Sophophora|...    37   0.10 
UniRef50_A5NR04 Cluster: TspO and MBR like protein; n=3; Alphapr...    34   0.72 
UniRef50_Q7QFW1 Cluster: ENSANGP00000018926; n=5; Endopterygota|...    33   0.95 
UniRef50_Q6Q8S4 Cluster: Predicted DNA polymerase III, alpha sub...    32   2.2  
UniRef50_Q7UWT4 Cluster: Putative uncharacterized protein; n=1; ...    32   2.9  
UniRef50_Q60CM0 Cluster: Type 4 fimbrial biogenesis protein PilE...    32   2.9  
UniRef50_UPI0000E48DD3 Cluster: PREDICTED: similar to KIAA0954 p...    31   6.7  
UniRef50_Q17H46 Cluster: Wd-repeat protein; n=2; Culicidae|Rep: ...    30   8.9  

>UniRef50_O76899 Cluster: CG14779-PA, isoform A; n=4;
           Sophophora|Rep: CG14779-PA, isoform A - Drosophila
           melanogaster (Fruit fly)
          Length = 256

 Score = 36.7 bits (81), Expect = 0.10
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 119 EYPKASNATLVGASITYVAGLSLLLFFAGPYW 214
           +YP+A+N  + GA +T+ +   L++ F  PYW
Sbjct: 21  DYPRATNGVVFGAIVTFASFFVLMMSFCSPYW 52


>UniRef50_A5NR04 Cluster: TspO and MBR like protein; n=3;
           Alphaproteobacteria|Rep: TspO and MBR like protein -
           Methylobacterium sp. 4-46
          Length = 543

 Score = 33.9 bits (74), Expect = 0.72
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = -1

Query: 207 GPAKKSSRDSPATYVMLAPTRVALEALGYSLSAAVITVEISTSSIG 70
           GP +KS + SP T + LA TR+A+ +    L+ AV+ V ++T+  G
Sbjct: 360 GPERKSGQSSPGTAMTLAATRLAVPSPALRLALAVLPV-LATALTG 404


>UniRef50_Q7QFW1 Cluster: ENSANGP00000018926; n=5;
           Endopterygota|Rep: ENSANGP00000018926 - Anopheles
           gambiae str. PEST
          Length = 230

 Score = 33.5 bits (73), Expect = 0.95
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 134 SNATLVGASITYVAGLSLLLFFAGPYW 214
           ++A ++GA ++YVA + LL+ F  PYW
Sbjct: 1   TDALVIGAVLSYVAAVFLLMSFCSPYW 27


>UniRef50_Q6Q8S4 Cluster: Predicted DNA polymerase III, alpha
           subunit; n=1; uncultured marine gamma proteobacterium
           EBAC20E09|Rep: Predicted DNA polymerase III, alpha
           subunit - uncultured marine gamma proteobacterium
           EBAC20E09
          Length = 1148

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
 Frame = -1

Query: 207 GPAKKSSRDSPATYVMLAPTRVALEALGYSLSAAVITVEISTSSIGTNYPIYL------R 46
           G AK     S A ++     + A      S SAA   +   T+ + T YP Y        
Sbjct: 715 GCAKNDISTSNAEHIFNLINQFAEYGFNKSHSAAYALISYQTAYLKTYYPEYFMASVLSS 774

Query: 45  HLNKTDKIYCLVSSC 1
            L+ TDKIY L+  C
Sbjct: 775 ELSNTDKIYSLIQEC 789


>UniRef50_Q7UWT4 Cluster: Putative uncharacterized protein; n=1;
           Pirellula sp.|Rep: Putative uncharacterized protein -
           Rhodopirellula baltica
          Length = 951

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 21/52 (40%), Positives = 28/52 (53%)
 Frame = -1

Query: 207 GPAKKSSRDSPATYVMLAPTRVALEALGYSLSAAVITVEISTSSIGTNYPIY 52
           G +KKS R    T    A T  +  A+G+SL AA IT+ I   SIG  Y ++
Sbjct: 203 GQSKKSGRR--LTKATSAETPGSASAIGWSLLAAAITLVIGIVSIGGVYAVH 252


>UniRef50_Q60CM0 Cluster: Type 4 fimbrial biogenesis protein PilE;
           n=1; Methylococcus capsulatus|Rep: Type 4 fimbrial
           biogenesis protein PilE - Methylococcus capsulatus
          Length = 150

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 177 PATYVMLAPTRVALEALGYSLSAAVITVEISTSSIGTNYPIYLRHLNKT 31
           P   V + P R A E  G+SL   +ITV I        YP Y  H+ +T
Sbjct: 4   PNGKVSITPARRAAEGRGFSLLELMITVAIIGILATVAYPSYKEHIVRT 52


>UniRef50_UPI0000E48DD3 Cluster: PREDICTED: similar to KIAA0954
           protein; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to KIAA0954 protein -
           Strongylocentrotus purpuratus
          Length = 571

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 189 SRDSPATYVMLAPTRVALEALGYSLSAAVITVEISTSSIGTNYPIY 52
           + D PAT +  APT + +   G   S  V+T  +  S + T  P+Y
Sbjct: 266 TNDDPATMLSKAPTMINMTTQGLKTS-TVLTTTLEMSKVPTAAPVY 310


>UniRef50_Q17H46 Cluster: Wd-repeat protein; n=2; Culicidae|Rep:
           Wd-repeat protein - Aedes aegypti (Yellowfever mosquito)
          Length = 792

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -3

Query: 163 NASSNKSSIGSFRILIVGGSHNCRNIYKFNWNKLSNLSSTL 41
           +A+++ SS  S   L++  S  CR IY+ ++N+LS   S +
Sbjct: 749 SATTSSSSSNSANNLLLAYSTGCRRIYRLHYNQLSGSLSCI 789


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,072,685
Number of Sequences: 1657284
Number of extensions: 2941074
Number of successful extensions: 9258
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9258
length of database: 575,637,011
effective HSP length: 50
effective length of database: 492,772,811
effective search space used: 10348229031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)