Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B02
         (216 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   0.45 
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    24   3.1  
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz...    24   3.1  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    24   3.1  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    23   4.1  
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    23   7.2  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    23   7.2  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    23   7.2  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    23   7.2  
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    23   7.2  
SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces ...    22   9.6  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    22   9.6  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    22   9.6  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 94  YSYDCRRQ*VS*SFQCYSC 150
           YSY CR +     +QCYSC
Sbjct: 404 YSYICRSRSCPSKYQCYSC 422


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 97  CRNIYKFNWNKLSNLSSTL 41
           C NI + +WN + NL+S L
Sbjct: 105 CLNILRQDWNPVLNLNSIL 123


>SPAC4D7.05 |sum1|tif34|translation initiation factor
           eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 144 VALEALGYSLSAAVITVEISTSSIGTNYPIYL 49
           V  E +GY+ +  V  V IS S      P+Y+
Sbjct: 111 VTEERMGYAGTVTVFRVPISESDAAAETPLYV 142


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +1

Query: 58  WIICSN*TCRYFYSYDCRRQ*VS*SFQCYSCWS*HYICGGTIPAAFFCWPILD 216
           W+I +N      Y  DC RQ V   F  Y      Y  G T+    + +  +D
Sbjct: 648 WLIFTNENTTKTYDMDCMRQ-VDNKFPPYPALLGPYSSGSTVKNLLYPYEEID 699


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 7   GYETINFICFIQVSKINWII 66
           GY  +N    +Q SKINW +
Sbjct: 224 GYNLLNSPPILQSSKINWAL 243


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 109 GSHNCRNIYKFN 74
           G+HNC  I KFN
Sbjct: 100 GTHNCEIIEKFN 111


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 157 SSNKSSIGSFRILIVGGSHNCRNIYKFNWNKLSNLSSTL 41
           S+N SS G F+I IVG         +  WN    +   L
Sbjct: 5   STNSSSGGIFKIAIVGAGGINFGTPEGPWNNAQRVEKVL 43


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -1

Query: 183 DSPATYVMLAPTRVALEALGYSLSAAVITVEISTSSI 73
           DSP  + +LA T + +  + YS+    I +    +++
Sbjct: 83  DSPTEHTLLARTTLPIRDVAYSVDGNWIAIASDETAV 119


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 120 SLSAAVITVEISTSSIGTNYPIYLRHLNKTDKIY 19
           SLSA VIT  +    + T + +  + +++T  +Y
Sbjct: 177 SLSAFVITYFLKPEQVDTFHVVLKKFISETPNLY 210


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 172 HICNASSNKSSIGSFRILIVGGSHNCRN-IYKFNWNKLSNLSSTLE*N 32
           H    + N   +G   ++I GGS +C N +    ++K  +LS+    N
Sbjct: 175 HAIGDAFNFIKLGHADVIIAGGSESCINPLTVAGFSKARSLSTKFNDN 222


>SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 274

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +2

Query: 71  PIELVDISTVMTAADNEYPKASNATLVGASITYVAGLSLLL 193
           PIEL        A D  YP+      +G+  T V  +  LL
Sbjct: 12  PIELAKRLACHMAVDENYPENPKVIGIGSGSTVVYVVERLL 52


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
          Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 69 TNYPIYLRHLN 37
          T YPIY RHL+
Sbjct: 46 TEYPIYHRHLS 56


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 207 GPAKK--SSRDSPATYVMLAPTRVALEALGYSLSAAVITVEI 88
           GP  K  +S+DS A ++   P ++  +   ++ S    T+EI
Sbjct: 271 GPQSKMSASKDSSAIFMTDTPNKIKNKINRHAFSGGGATIEI 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 865,156
Number of Sequences: 5004
Number of extensions: 12720
Number of successful extensions: 39
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)