Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B02
         (216 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114...    26   3.6  
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582...    25   6.3  
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965...    25   8.3  

>02_04_0449 +
           23010099-23010317,23010873-23010934,23011399-23011450,
           23011803-23011917,23012024-23012118,23012852-23012958,
           23013042-23013156,23014159-23014203,23014324-23014392
          Length = 292

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 153 PTRVALEALGYSLSAAVITVEISTSSI-GTNYPIYLRHLNKTDK 25
           P+ +A +     L ++ + V I   S+ GTNYP Y+   N+  K
Sbjct: 172 PSVIACDMAHTPLESSSVDVAIFCLSLMGTNYPSYIEEANRVLK 215


>04_04_1475 +
           33856351-33856582,33857614-33857781,33858156-33858261,
           33858391-33858442,33858525-33858642,33858736-33858766,
           33858962-33858985,33859075-33859199,33860087-33860168,
           33860319-33860441,33860539-33860592,33860669-33860738,
           33861276-33861309,33861824-33862170
          Length = 521

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 210 YGPAKKSSRDSPATYVMLAPTRVALEALGYSLSAAVITVEISTSSI 73
           YGP  + S  +P    +L    V     GY LSA V+   I++  +
Sbjct: 348 YGPNGQKSSANPKKVDILEGMHVISVGCGYGLSAIVVDRSIASDRL 393


>03_02_0584 -
           9650996-9651488,9651630-9652049,9652129-9652158,
           9652201-9652287,9652657-9653669,9653832-9654854,
           9654946-9654969
          Length = 1029

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 126 GYSLSAAVITVEISTSSIGTNYPIYLRHLNKTD 28
           G SLS +   VE S ++ G N  ++ +H+N+++
Sbjct: 304 GLSLSLSSKHVEESENNAGLNLSLFGKHINESE 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,619,646
Number of Sequences: 37544
Number of extensions: 82531
Number of successful extensions: 231
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)