Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_B02
         (216 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical pr...    29   0.59 
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    29   0.59 
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    29   0.59 
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    29   0.59 
U41556-9|AAK39192.1|  692|Caenorhabditis elegans Potassium chann...    26   3.2  
U41556-8|AAM51518.1|  740|Caenorhabditis elegans Potassium chann...    26   3.2  
AY572974-1|AAT77227.1|  692|Caenorhabditis elegans KQT-1 potassi...    26   3.2  
Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z49911-3|CAA90126.2|  735|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U39852-5|AAK39258.1|  410|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF003137-5|AAB93643.1|  491|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical
           protein F44F1.4 protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 105 VITVEISTSSIGT-NYPIYLRHLNKTDKIYCLVSSC 1
           V  V  +T S  T NY IY    N T+K+YC  +SC
Sbjct: 246 VQVVSKTTGSYSTYNYTIYTGKFNNTNKVYC--TSC 279


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -1

Query: 120 SLSAAVITVEISTSSIGTNYPIYLRHLNKTDKIYCLVSSC 1
           S  A   T    T     N P + R+ N T +IYC V SC
Sbjct: 345 SRGAFAATSPSMTQFHNLNTPFFTRNANDTIEIYCTVLSC 384


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -1

Query: 120 SLSAAVITVEISTSSIGTNYPIYLRHLNKTDKIYCLVSSC 1
           S  A   T    T     N P + R+ N T +IYC V SC
Sbjct: 345 SRGAFAATSPSMTQFHNLNTPFFTRNANDTIEIYCTVLSC 384


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -1

Query: 120 SLSAAVITVEISTSSIGTNYPIYLRHLNKTDKIYCLVSSC 1
           S  A   T    T     N P + R+ N T +IYC V SC
Sbjct: 345 SRGAFAATSPSMTQFHNLNTPFFTRNANDTIEIYCTVLSC 384


>U41556-9|AAK39192.1|  692|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 1, isoform a protein.
          Length = 692

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 213 QYGPAKKSSRDSPATYVMLAPTRVAL---EALGY 121
           +YG +KK++ DS     MLAP+   L   EA+GY
Sbjct: 460 KYGGSKKATDDSVLQSRMLAPSNAHLDEEEAVGY 493


>U41556-8|AAM51518.1|  740|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 1, isoform b protein.
          Length = 740

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 213 QYGPAKKSSRDSPATYVMLAPTRVAL---EALGY 121
           +YG +KK++ DS     MLAP+   L   EA+GY
Sbjct: 508 KYGGSKKATDDSVLQSRMLAPSNAHLDEEEAVGY 541


>AY572974-1|AAT77227.1|  692|Caenorhabditis elegans KQT-1 potassium
           channel protein.
          Length = 692

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 213 QYGPAKKSSRDSPATYVMLAPTRVAL---EALGY 121
           +YG +KK++ DS     MLAP+   L   EA+GY
Sbjct: 460 KYGGSKKATDDSVLQSRMLAPSNAHLDEEEAVGY 493


>Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical
           protein C47E8.3 protein.
          Length = 405

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 144 VALEALGYSLSAAVITVE-ISTSSIGTNYPIYLRHLNKTDKIYCLVSSC 1
           V++  L  SL   +   E I+ SS+   +P    +LN    I+ L++SC
Sbjct: 272 VSIYLLSQSLQVFLTVWETINRSSLEDGFPTMYSYLNDIVSIFTLLASC 320


>Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical
           protein W09D6.1b protein.
          Length = 714

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 163 NASSNKSSIGSFRILIVGGSH 101
           +A S  S+  S RIL++GGSH
Sbjct: 222 SADSLLSATSSLRILLLGGSH 242


>Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical
           protein W09D6.1a protein.
          Length = 707

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 163 NASSNKSSIGSFRILIVGGSH 101
           +A S  S+  S RIL++GGSH
Sbjct: 222 SADSLLSATSSLRILLLGGSH 242


>Z49911-3|CAA90126.2|  735|Caenorhabditis elegans Hypothetical
           protein M28.4 protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 119 EYPKASNATLVGASITYVAGLSLLLF 196
           ++PK +   LVG  ++ V  + LLLF
Sbjct: 380 QFPKLATIVLVGFYVSIVVSIVLLLF 405


>U39852-5|AAK39258.1|  410|Caenorhabditis elegans Hypothetical
           protein K10C2.3 protein.
          Length = 410

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 72  GTNYPIYLRHLNKTDKI 22
           GT Y I+L H N+TD +
Sbjct: 227 GTFYSIWLEHFNQTDDL 243


>AF003137-5|AAB93643.1|  491|Caenorhabditis elegans Hypothetical
           protein C27A12.6 protein.
          Length = 491

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +1

Query: 31  CFIQVSK---INWIICSN*TCRYFYSYDCRRQ*VS*SFQCYSC 150
           C I + K    N ++C+N  CRY + + C        +Q Y+C
Sbjct: 283 CMIPIEKNGGCNRMLCTNSGCRYEFCWMCLEPWTKHGYQ-YAC 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,839,914
Number of Sequences: 27780
Number of extensions: 74324
Number of successful extensions: 196
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)